Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC15.89■□□□□ 0.13
VCANP13611 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC15.89■□□□□ 0.13
VCANP13611 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
VCANP13611 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
VCANP13611 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
VCANP13611 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
VCANP13611 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
VCANP13611 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
VCANP13611 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
VCANP13611 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 AC093909.3-201ENST00000504783 336 ntBASIC15.89■□□□□ 0.13
VCANP13611 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 AC005041.3-201ENST00000606287 649 ntBASIC15.89■□□□□ 0.13
VCANP13611 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
VCANP13611 BNIP3P1-202ENST00000550043 1585 ntBASIC15.88■□□□□ 0.13
VCANP13611 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
VCANP13611 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VCANP13611 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.88■□□□□ 0.13
VCANP13611 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC15.88■□□□□ 0.13
VCANP13611 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
VCANP13611 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
VCANP13611 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VCANP13611 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
VCANP13611 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC15.88■□□□□ 0.13
VCANP13611 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC15.88■□□□□ 0.13
VCANP13611 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC15.88■□□□□ 0.13
VCANP13611 AC093752.3-201ENST00000567343 901 ntBASIC15.88■□□□□ 0.13
VCANP13611 AC005324.6-201ENST00000587972 613 ntBASIC15.88■□□□□ 0.13
VCANP13611 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VCANP13611 AP001094.4-201ENST00000579008 2176 ntBASIC15.88■□□□□ 0.13
VCANP13611 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
VCANP13611 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VCANP13611 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
VCANP13611 KRT8P29-201ENST00000420409 1371 ntBASIC15.88■□□□□ 0.13
VCANP13611 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.88■□□□□ 0.13
VCANP13611 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
VCANP13611 AC108724.1-201ENST00000481669 352 ntBASIC15.88■□□□□ 0.13
VCANP13611 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC15.88■□□□□ 0.13
VCANP13611 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.88■□□□□ 0.13
VCANP13611 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.88■□□□□ 0.13
VCANP13611 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
VCANP13611 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.88■□□□□ 0.13
VCANP13611 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.88■□□□□ 0.13
VCANP13611 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VCANP13611 AC092364.2-201ENST00000596710 2692 ntBASIC15.88■□□□□ 0.13
VCANP13611 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VCANP13611 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC15.88■□□□□ 0.13
VCANP13611 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VCANP13611 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC15.87■□□□□ 0.13
VCANP13611 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.87■□□□□ 0.13
VCANP13611 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC15.87■□□□□ 0.13
VCANP13611 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC15.87■□□□□ 0.13
VCANP13611 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC15.87■□□□□ 0.13
VCANP13611 AC090164.2-201ENST00000611487 516 ntBASIC15.87■□□□□ 0.13
VCANP13611 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 AL359258.3-201ENST00000622910 2331 ntBASIC15.87■□□□□ 0.13
VCANP13611 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
VCANP13611 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 SIGLEC20P-201ENST00000595243 1311 ntBASIC15.87■□□□□ 0.13
VCANP13611 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 MIR557-201ENST00000385239 98 ntBASIC15.87■□□□□ 0.13
VCANP13611 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC15.87■□□□□ 0.13
VCANP13611 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC15.87■□□□□ 0.13
VCANP13611 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC15.87■□□□□ 0.13
VCANP13611 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC15.87■□□□□ 0.13
VCANP13611 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
VCANP13611 HPN-206ENST00000597419 1212 ntTSL 5 BASIC15.87■□□□□ 0.13
VCANP13611 AL132994.2-201ENST00000603120 687 ntBASIC15.87■□□□□ 0.13
VCANP13611 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.87■□□□□ 0.13
VCANP13611 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC15.87■□□□□ 0.13
VCANP13611 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 RNU1-114P-201ENST00000365297 166 ntBASIC15.87■□□□□ 0.13
VCANP13611 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
VCANP13611 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms