Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 AL591846.1-201ENST00000451736 433 ntBASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 AKR7A2P1-201ENST00000460134 915 ntBASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 KLK3-211ENST00000597483 810 ntTSL 2 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 AC138951.2-201ENST00000623455 1161 ntBASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 AC138028.6-201ENST00000616106 1482 ntBASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 CD8B2-202ENST00000417670 633 ntBASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 AC091804.1-201ENST00000486888 567 ntBASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.07■□□□□ 0
PCDHGA1Q9Y5H4 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms