Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
VIMP08670 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
VIMP08670 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
VIMP08670 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.91■□□□□ 0.14
VIMP08670 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 METTL23-204ENST00000586752 904 ntTSL 2 BASIC15.91■□□□□ 0.14
VIMP08670 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
VIMP08670 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC15.91■□□□□ 0.14
VIMP08670 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.91■□□□□ 0.14
VIMP08670 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 ZBED1P1-201ENST00000502364 1930 ntBASIC15.91■□□□□ 0.14
VIMP08670 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.91■□□□□ 0.14
VIMP08670 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
VIMP08670 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.91■□□□□ 0.14
VIMP08670 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.91■□□□□ 0.14
VIMP08670 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.91■□□□□ 0.14
VIMP08670 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
VIMP08670 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
VIMP08670 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
VIMP08670 OS9-207ENST00000439210 1946 ntTSL 2 BASIC15.9■□□□□ 0.14
VIMP08670 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.9■□□□□ 0.14
VIMP08670 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC15.9■□□□□ 0.14
VIMP08670 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
VIMP08670 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15.9■□□□□ 0.14
VIMP08670 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
VIMP08670 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
VIMP08670 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.9■□□□□ 0.14
VIMP08670 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.9■□□□□ 0.14
VIMP08670 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.9■□□□□ 0.14
VIMP08670 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 AC074051.2-201ENST00000565115 352 ntBASIC15.9■□□□□ 0.14
VIMP08670 MIR5100-201ENST00000579544 119 ntBASIC15.9■□□□□ 0.14
VIMP08670 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.9■□□□□ 0.14
VIMP08670 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
VIMP08670 DBP-204ENST00000599385 709 ntTSL 3 BASIC15.9■□□□□ 0.14
VIMP08670 AL365330.1-201ENST00000607459 531 ntBASIC15.9■□□□□ 0.14
VIMP08670 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.9■□□□□ 0.14
VIMP08670 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
VIMP08670 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.9■□□□□ 0.14
VIMP08670 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.9■□□□□ 0.14
VIMP08670 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
VIMP08670 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 AC129492.6-201ENST00000611383 1305 ntBASIC15.9■□□□□ 0.14
VIMP08670 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
VIMP08670 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC15.9■□□□□ 0.14
VIMP08670 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VIMP08670 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC15.89■□□□□ 0.14
VIMP08670 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.89■□□□□ 0.13
VIMP08670 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.89■□□□□ 0.13
VIMP08670 AC127383.1-201ENST00000444697 1800 ntBASIC15.89■□□□□ 0.13
VIMP08670 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.89■□□□□ 0.13
VIMP08670 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
VIMP08670 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
VIMP08670 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC15.89■□□□□ 0.13
VIMP08670 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
VIMP08670 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VIMP08670 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VIMP08670 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VIMP08670 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
VIMP08670 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VIMP08670 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC15.89■□□□□ 0.13
VIMP08670 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VIMP08670 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms