Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Trav13d-3J3QMG8 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC18.57■□□□□ 0.56
Trav13d-3J3QMG8 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav13d-3J3QMG8 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav13d-3J3QMG8 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trav13d-3J3QMG8 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC18.56■□□□□ 0.56
Trav13d-3J3QMG8 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav13d-3J3QMG8 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav13d-3J3QMG8 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Trav13d-3J3QMG8 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav13d-3J3QMG8 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav13d-3J3QMG8 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav13d-3J3QMG8 Gm43566-201ENSMUST00000196851 808 ntBASIC18.55■□□□□ 0.56
Trav13d-3J3QMG8 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav13d-3J3QMG8 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Trav13d-3J3QMG8 Gm8093-201ENSMUST00000128935 1892 ntBASIC18.54■□□□□ 0.56
Trav13d-3J3QMG8 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav13d-3J3QMG8 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC18.54■□□□□ 0.56
Trav13d-3J3QMG8 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav13d-3J3QMG8 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Trav13d-3J3QMG8 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav13d-3J3QMG8 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav13d-3J3QMG8 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav13d-3J3QMG8 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav13d-3J3QMG8 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav13d-3J3QMG8 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav13d-3J3QMG8 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav13d-3J3QMG8 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC18.53■□□□□ 0.56
Trav13d-3J3QMG8 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Trav13d-3J3QMG8 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav13d-3J3QMG8 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Trav13d-3J3QMG8 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav13d-3J3QMG8 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Trav13d-3J3QMG8 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trav13d-3J3QMG8 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 AC116713.1-201ENSMUST00000215074 430 ntBASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
Trav13d-3J3QMG8 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav13d-3J3QMG8 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav13d-3J3QMG8 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav13d-3J3QMG8 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Trav13d-3J3QMG8 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC18.5■□□□□ 0.55
Trav13d-3J3QMG8 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav13d-3J3QMG8 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav13d-3J3QMG8 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav13d-3J3QMG8 Gm43403-201ENSMUST00000198011 1786 ntBASIC18.5■□□□□ 0.55
Trav13d-3J3QMG8 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav13d-3J3QMG8 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav13d-3J3QMG8 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav13d-3J3QMG8 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav13d-3J3QMG8 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
Trav13d-3J3QMG8 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trav13d-3J3QMG8 AC164883.3-201ENSMUST00000227396 1774 ntBASIC18.48■□□□□ 0.55
Trav13d-3J3QMG8 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav13d-3J3QMG8 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav13d-3J3QMG8 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav13d-3J3QMG8 Gm12504-201ENSMUST00000120860 2231 ntBASIC18.47■□□□□ 0.55
Trav13d-3J3QMG8 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav13d-3J3QMG8 Gm16464-201ENSMUST00000117815 1095 ntBASIC18.47■□□□□ 0.55
Trav13d-3J3QMG8 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav13d-3J3QMG8 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Trav13d-3J3QMG8 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav13d-3J3QMG8 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav13d-3J3QMG8 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav13d-3J3QMG8 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav13d-3J3QMG8 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav13d-3J3QMG8 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Trav13d-3J3QMG8 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Trav13d-3J3QMG8 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav13d-3J3QMG8 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Trav13d-3J3QMG8 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav13d-3J3QMG8 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC18.46■□□□□ 0.55
Trav13d-3J3QMG8 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Trav13d-3J3QMG8 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
Trav13d-3J3QMG8 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
Trav13d-3J3QMG8 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trav13d-3J3QMG8 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Trav13d-3J3QMG8 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav13d-3J3QMG8 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav13d-3J3QMG8 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC18.46■□□□□ 0.54
Trav13d-3J3QMG8 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav13d-3J3QMG8 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav13d-3J3QMG8 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav13d-3J3QMG8 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC18.45■□□□□ 0.54
Trav13d-3J3QMG8 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav13d-3J3QMG8 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trav13d-3J3QMG8 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms