Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.46□□□□□ -0.09
MSX1P28360 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
MSX1P28360 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 BTBD7P1-201ENST00000447253 1453 ntBASIC14.46□□□□□ -0.09
MSX1P28360 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.46□□□□□ -0.09
MSX1P28360 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.46□□□□□ -0.09
MSX1P28360 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.46□□□□□ -0.09
MSX1P28360 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.46□□□□□ -0.09
MSX1P28360 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC14.46□□□□□ -0.09
MSX1P28360 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.46□□□□□ -0.09
MSX1P28360 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.46□□□□□ -0.09
MSX1P28360 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.46□□□□□ -0.09
MSX1P28360 MTND2P7-201ENST00000521337 640 ntBASIC14.46□□□□□ -0.09
MSX1P28360 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.46□□□□□ -0.09
MSX1P28360 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.46□□□□□ -0.09
MSX1P28360 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 HNRNPUP1-201ENST00000554987 333 ntBASIC14.46□□□□□ -0.09
MSX1P28360 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.46□□□□□ -0.09
MSX1P28360 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
MSX1P28360 AC010336.2-201ENST00000564226 506 ntBASIC14.46□□□□□ -0.09
MSX1P28360 AC009407.1-201ENST00000568958 598 ntBASIC14.46□□□□□ -0.09
MSX1P28360 AC140912.1-201ENST00000577171 1054 ntBASIC14.46□□□□□ -0.09
MSX1P28360 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.46□□□□□ -0.09
MSX1P28360 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.46□□□□□ -0.09
MSX1P28360 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.46□□□□□ -0.09
MSX1P28360 AL132655.2-201ENST00000596276 594 ntBASIC14.46□□□□□ -0.09
MSX1P28360 AC097359.3-201ENST00000603982 1210 ntBASIC14.46□□□□□ -0.09
MSX1P28360 AC008738.7-201ENST00000609744 511 ntBASIC14.46□□□□□ -0.09
MSX1P28360 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
MSX1P28360 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
MSX1P28360 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
MSX1P28360 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
MSX1P28360 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.46□□□□□ -0.1
MSX1P28360 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
MSX1P28360 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
MSX1P28360 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.46□□□□□ -0.1
MSX1P28360 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
MSX1P28360 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.46□□□□□ -0.1
MSX1P28360 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
MSX1P28360 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
MSX1P28360 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX1P28360 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.45□□□□□ -0.1
MSX1P28360 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX1P28360 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 AC007541.1-201ENST00000570282 1469 ntBASIC14.45□□□□□ -0.1
MSX1P28360 Z97205.2-201ENST00000564697 1639 ntBASIC14.45□□□□□ -0.1
MSX1P28360 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.45□□□□□ -0.1
MSX1P28360 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.45□□□□□ -0.1
MSX1P28360 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX1P28360 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
MSX1P28360 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.45□□□□□ -0.1
MSX1P28360 AL353779.1-201ENST00000434793 351 ntBASIC14.45□□□□□ -0.1
MSX1P28360 ATP5G2P4-201ENST00000442175 420 ntBASIC14.45□□□□□ -0.1
MSX1P28360 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX1P28360 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX1P28360 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.45□□□□□ -0.1
MSX1P28360 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.45□□□□□ -0.1
MSX1P28360 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
MSX1P28360 AL512361.1-201ENST00000554200 418 ntBASIC14.45□□□□□ -0.1
MSX1P28360 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX1P28360 MIR4313-201ENST00000580760 101 ntBASIC14.45□□□□□ -0.1
MSX1P28360 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX1P28360 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 AL844908.2-201ENST00000609461 460 ntBASIC14.45□□□□□ -0.1
MSX1P28360 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
MSX1P28360 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.45□□□□□ -0.1
MSX1P28360 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
MSX1P28360 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
MSX1P28360 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
MSX1P28360 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms