Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HOXD4P09016 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
HOXD4P09016 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD4P09016 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.36□□□□□ -0.11
HOXD4P09016 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXD4P09016 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD4P09016 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.36□□□□□ -0.11
HOXD4P09016 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD4P09016 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.36□□□□□ -0.11
HOXD4P09016 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HOXD4P09016 IGHV3-71-201ENST00000523324 359 ntBASIC14.36□□□□□ -0.11
HOXD4P09016 TPRX2P-201ENST00000535362 881 ntBASIC14.36□□□□□ -0.11
HOXD4P09016 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.36□□□□□ -0.11
HOXD4P09016 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HOXD4P09016 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
HOXD4P09016 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
HOXD4P09016 AC243562.2-201ENST00000561247 970 ntBASIC14.36□□□□□ -0.11
HOXD4P09016 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD4P09016 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HOXD4P09016 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXD4P09016 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXD4P09016 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HOXD4P09016 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
HOXD4P09016 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
HOXD4P09016 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXD4P09016 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HOXD4P09016 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXD4P09016 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
HOXD4P09016 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.35□□□□□ -0.11
HOXD4P09016 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXD4P09016 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXD4P09016 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC14.35□□□□□ -0.11
HOXD4P09016 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC14.35□□□□□ -0.11
HOXD4P09016 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.35□□□□□ -0.11
HOXD4P09016 GIMAP3P-201ENST00000495150 836 ntBASIC14.35□□□□□ -0.11
HOXD4P09016 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXD4P09016 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.35□□□□□ -0.11
HOXD4P09016 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC14.35□□□□□ -0.11
HOXD4P09016 AC092337.1-201ENST00000568699 1129 ntBASIC14.35□□□□□ -0.11
HOXD4P09016 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.35□□□□□ -0.11
HOXD4P09016 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXD4P09016 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 AC004461.2-201ENST00000629517 803 ntBASIC14.35□□□□□ -0.11
HOXD4P09016 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXD4P09016 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXD4P09016 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
HOXD4P09016 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXD4P09016 AC092171.3-201ENST00000610122 2651 ntBASIC14.35□□□□□ -0.11
HOXD4P09016 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD4P09016 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
HOXD4P09016 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXD4P09016 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXD4P09016 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXD4P09016 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HOXD4P09016 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXD4P09016 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
HOXD4P09016 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXD4P09016 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HOXD4P09016 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXD4P09016 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXD4P09016 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
HOXD4P09016 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXD4P09016 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXD4P09016 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
HOXD4P09016 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms