Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 AC021723.1-201ENST00000486306 515 ntBASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 NEU3-205ENST00000531619 582 ntTSL 5 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 AC022748.3-201ENST00000621828 275 ntBASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 KRT8P29-201ENST00000420409 1371 ntBASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 RPL7P35-201ENST00000446943 740 ntBASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 AP002490.2-201ENST00000524791 560 ntBASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 RTN3P1-201ENST00000536295 711 ntBASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 BX539320.1-201ENST00000623759 877 ntBASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMC1BQ8NDV3 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 PCDHB17P-201ENST00000539533 2393 ntBASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 AC116345.2-201ENST00000512837 523 ntBASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 EID1-202ENST00000560490 584 ntTSL 3 BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 AC103988.2-201ENST00000561804 725 ntBASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.52■□□□□ 0.56
SMC1BQ8NDV3 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SMC1BQ8NDV3 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.55
SMC1BQ8NDV3 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC18.52■□□□□ 0.55
SMC1BQ8NDV3 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.52■□□□□ 0.55
SMC1BQ8NDV3 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SMC1BQ8NDV3 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms