Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SMC1BQ8NDV3 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 CMC1-204ENST00000423894 549 ntTSL 2 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 CYP2AB1P-202ENST00000454440 1456 ntBASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 AC106820.2-201ENST00000563775 3264 ntBASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 AL391256.1-201ENST00000443260 1855 ntBASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.56■□□□□ 0.56
SMC1BQ8NDV3 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 OR6D1P-203ENST00000641209 4860 ntBASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 ACTBP8-201ENST00000403258 1108 ntBASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 SLC16A6P1-201ENST00000413214 1059 ntBASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 FAU-202ENST00000434372 533 ntTSL 2 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 RPL18P13-201ENST00000478088 569 ntBASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 NCK2-206ENST00000522586 490 ntTSL 5 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC18.55■□□□□ 0.56
SMC1BQ8NDV3 GGT4P-201ENST00000623672 1708 ntBASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMC1BQ8NDV3 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms