Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
COL4A4P53420 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A4P53420 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A4P53420 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A4P53420 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A4P53420 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A4P53420 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A4P53420 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.57■□□□□ 0.24
COL4A4P53420 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC16.56■□□□□ 0.24
COL4A4P53420 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A4P53420 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
COL4A4P53420 MIR769-201ENST00000390225 118 ntBASIC16.56■□□□□ 0.24
COL4A4P53420 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.56■□□□□ 0.24
COL4A4P53420 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.56■□□□□ 0.24
COL4A4P53420 NUP210P1-202ENST00000504322 710 ntBASIC16.56■□□□□ 0.24
COL4A4P53420 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC16.56■□□□□ 0.24
COL4A4P53420 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC16.56■□□□□ 0.24
COL4A4P53420 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
COL4A4P53420 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
COL4A4P53420 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC16.56■□□□□ 0.24
COL4A4P53420 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.56■□□□□ 0.24
COL4A4P53420 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC16.56■□□□□ 0.24
COL4A4P53420 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
COL4A4P53420 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.56■□□□□ 0.24
COL4A4P53420 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.56■□□□□ 0.24
COL4A4P53420 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.56■□□□□ 0.24
COL4A4P53420 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A4P53420 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A4P53420 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.56■□□□□ 0.24
COL4A4P53420 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A4P53420 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A4P53420 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.56■□□□□ 0.24
COL4A4P53420 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A4P53420 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A4P53420 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.56■□□□□ 0.24
COL4A4P53420 NKAIN1P1-201ENST00000435754 582 ntBASIC16.56■□□□□ 0.24
COL4A4P53420 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16.56■□□□□ 0.24
COL4A4P53420 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A4P53420 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC16.56■□□□□ 0.24
COL4A4P53420 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC16.56■□□□□ 0.24
COL4A4P53420 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC16.56■□□□□ 0.24
COL4A4P53420 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC16.56■□□□□ 0.24
COL4A4P53420 MIR4313-201ENST00000580760 101 ntBASIC16.56■□□□□ 0.24
COL4A4P53420 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A4P53420 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.55■□□□□ 0.24
COL4A4P53420 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A4P53420 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A4P53420 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
COL4A4P53420 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.55■□□□□ 0.24
COL4A4P53420 AC008132.1-202ENST00000342005 1389 ntBASIC16.55■□□□□ 0.24
COL4A4P53420 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A4P53420 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A4P53420 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
COL4A4P53420 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.55■□□□□ 0.24
COL4A4P53420 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.55■□□□□ 0.24
COL4A4P53420 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A4P53420 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A4P53420 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC16.55■□□□□ 0.24
COL4A4P53420 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A4P53420 ACTG1P2-201ENST00000415776 1125 ntBASIC16.55■□□□□ 0.24
COL4A4P53420 ACTG1P11-201ENST00000425411 1125 ntBASIC16.55■□□□□ 0.24
COL4A4P53420 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC16.55■□□□□ 0.24
COL4A4P53420 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC16.55■□□□□ 0.24
COL4A4P53420 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.55■□□□□ 0.24
COL4A4P53420 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
COL4A4P53420 AC134698.3-201ENST00000523880 214 ntBASIC16.55■□□□□ 0.24
COL4A4P53420 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A4P53420 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC16.55■□□□□ 0.24
COL4A4P53420 AC073413.1-201ENST00000603927 732 ntBASIC16.55■□□□□ 0.24
COL4A4P53420 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC16.55■□□□□ 0.24
COL4A4P53420 AC018892.3-201ENST00000623986 2499 ntBASIC16.55■□□□□ 0.24
COL4A4P53420 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A4P53420 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A4P53420 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A4P53420 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A4P53420 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A4P53420 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A4P53420 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A4P53420 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A4P53420 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
COL4A4P53420 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
COL4A4P53420 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
COL4A4P53420 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.54■□□□□ 0.24
COL4A4P53420 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.54■□□□□ 0.24
COL4A4P53420 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A4P53420 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A4P53420 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
COL4A4P53420 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A4P53420 UFM1-202ENST00000379649 846 ntTSL 4 BASIC16.54■□□□□ 0.24
COL4A4P53420 MPV17-205ENST00000402310 906 ntTSL 5 BASIC16.54■□□□□ 0.24
COL4A4P53420 AL355334.1-201ENST00000417713 215 ntBASIC16.54■□□□□ 0.24
COL4A4P53420 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A4P53420 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC16.54■□□□□ 0.24
COL4A4P53420 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A4P53420 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.54■□□□□ 0.24
COL4A4P53420 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC16.54■□□□□ 0.24
COL4A4P53420 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC16.54■□□□□ 0.24
COL4A4P53420 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A4P53420 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A4P53420 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms