Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 AC136759.1-202ENST00000530858 2194 ntBASIC16.03■□□□□ 0.16
VCANP13611 AP003680.1-201ENST00000598970 3660 ntBASIC16.03■□□□□ 0.16
VCANP13611 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
VCANP13611 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 AL137077.2-201ENST00000635124 1608 ntBASIC16.03■□□□□ 0.16
VCANP13611 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.03■□□□□ 0.16
VCANP13611 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.03■□□□□ 0.16
VCANP13611 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
VCANP13611 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.03■□□□□ 0.16
VCANP13611 RPL18AP3-201ENST00000462885 528 ntBASIC16.03■□□□□ 0.16
VCANP13611 NAT9-211ENST00000580632 799 ntTSL 3 BASIC16.03■□□□□ 0.16
VCANP13611 AC107373.2-201ENST00000607735 490 ntBASIC16.03■□□□□ 0.16
VCANP13611 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
VCANP13611 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VCANP13611 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
VCANP13611 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.02■□□□□ 0.16
VCANP13611 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.02■□□□□ 0.16
VCANP13611 KRT8P4-201ENST00000509735 1454 ntBASIC16.02■□□□□ 0.16
VCANP13611 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
VCANP13611 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.02■□□□□ 0.16
VCANP13611 IL9RP3-201ENST00000442856 1674 ntBASIC16.02■□□□□ 0.16
VCANP13611 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
VCANP13611 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.02■□□□□ 0.16
VCANP13611 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.02■□□□□ 0.16
VCANP13611 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VCANP13611 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VCANP13611 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VCANP13611 AC130709.1-201ENST00000484779 1212 ntBASIC16.02■□□□□ 0.16
VCANP13611 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
VCANP13611 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
VCANP13611 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
VCANP13611 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
VCANP13611 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VCANP13611 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VCANP13611 AL121723.1-201ENST00000445194 1519 ntBASIC16.02■□□□□ 0.16
VCANP13611 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VCANP13611 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCANP13611 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCANP13611 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCANP13611 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCANP13611 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCANP13611 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.02■□□□□ 0.15
VCANP13611 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.15
VCANP13611 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCANP13611 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.02■□□□□ 0.15
VCANP13611 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCANP13611 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.15
VCANP13611 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCANP13611 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
VCANP13611 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
VCANP13611 AC020916.1-201ENST00000587762 1774 ntBASIC16.02■□□□□ 0.15
VCANP13611 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.15
VCANP13611 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCANP13611 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VCANP13611 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCANP13611 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
VCANP13611 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VCANP13611 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VCANP13611 AL353637.1-201ENST00000451571 732 ntBASIC16.01■□□□□ 0.15
VCANP13611 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCANP13611 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
VCANP13611 THY1-209ENST00000580275 578 ntTSL 3 BASIC16.01■□□□□ 0.15
VCANP13611 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.01■□□□□ 0.15
VCANP13611 AC068587.8-201ENST00000641239 219 ntBASIC16.01■□□□□ 0.15
VCANP13611 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCANP13611 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VCANP13611 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.01■□□□□ 0.15
VCANP13611 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCANP13611 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCANP13611 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
VCANP13611 AC022211.2-201ENST00000585075 2527 ntBASIC16.01■□□□□ 0.15
VCANP13611 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
VCANP13611 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.01■□□□□ 0.15
VCANP13611 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCANP13611 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
VCANP13611 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
VCANP13611 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCANP13611 POM121L8P-201ENST00000417732 1281 ntBASIC16.01■□□□□ 0.15
VCANP13611 ISCA2P1-201ENST00000425548 448 ntBASIC16.01■□□□□ 0.15
VCANP13611 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.01■□□□□ 0.15
VCANP13611 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC16.01■□□□□ 0.15
VCANP13611 POM121L9P-203ENST00000441984 1285 ntBASIC16.01■□□□□ 0.15
VCANP13611 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC16.01■□□□□ 0.15
VCANP13611 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC16.01■□□□□ 0.15
VCANP13611 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC16.01■□□□□ 0.15
VCANP13611 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
VCANP13611 MIR4321-201ENST00000592276 80 ntBASIC16.01■□□□□ 0.15
VCANP13611 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
VCANP13611 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.01■□□□□ 0.15
VCANP13611 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.01■□□□□ 0.15
VCANP13611 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
VCANP13611 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
VCANP13611 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms