Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AL512384.1-201ENST00000406683 331 ntBASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 RPL13P2-201ENST00000440687 659 ntBASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 MYCLP2-201ENST00000449268 967 ntBASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 INE1-201ENST00000456273 945 ntBASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 RN7SL752P-201ENST00000463779 287 ntBASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 GIMAP3P-201ENST00000495150 836 ntBASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 AC106886.1-201ENST00000568660 600 ntBASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 IGHV3-72-202ENST00000621503 303 ntBASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 AL365203.3-201ENST00000609742 2057 ntBASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 ELK1P1-201ENST00000485699 580 ntBASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 AC123567.1-201ENST00000548294 1261 ntBASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAIPQ9BWF2 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 AZGP1P1-201ENST00000411909 902 ntBASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms