Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 AC119751.2-201ENST00000504529 210 ntBASIC15.4■□□□□ 0.06
LMX1AQ8TE12 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 ENPP7P5-201ENST00000541031 1031 ntBASIC15.4■□□□□ 0.06
LMX1AQ8TE12 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 AC120045.2-201ENST00000567334 178 ntBASIC15.4■□□□□ 0.06
LMX1AQ8TE12 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
LMX1AQ8TE12 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 BCRP2-202ENST00000447763 634 ntBASIC15.39■□□□□ 0.05
LMX1AQ8TE12 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 BCRP6-201ENST00000510112 632 ntBASIC15.39■□□□□ 0.05
LMX1AQ8TE12 BCRP7-201ENST00000511549 544 ntBASIC15.39■□□□□ 0.05
LMX1AQ8TE12 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 PTP4A1P2-201ENST00000546033 454 ntBASIC15.39■□□□□ 0.05
LMX1AQ8TE12 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 AC124283.3-201ENST00000570869 594 ntBASIC15.39■□□□□ 0.05
LMX1AQ8TE12 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 AL022328.1-201ENST00000610050 478 ntBASIC15.39■□□□□ 0.05
LMX1AQ8TE12 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.39■□□□□ 0.05
LMX1AQ8TE12 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms