Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CYP51A1P3-201ENST00000400072 1428 ntBASIC16.42■□□□□ 0.22
CHD9Q3L8U1 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 MIR1227-201ENST00000408484 88 ntBASIC16.41■□□□□ 0.22
CHD9Q3L8U1 MIR4783-201ENST00000580343 82 ntBASIC16.41■□□□□ 0.22
CHD9Q3L8U1 AP001065.2-201ENST00000617205 644 ntBASIC16.41■□□□□ 0.22
CHD9Q3L8U1 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 RN7SL8P-201ENST00000461771 266 ntBASIC16.41■□□□□ 0.22
CHD9Q3L8U1 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
CHD9Q3L8U1 ACTBP8-201ENST00000403258 1108 ntBASIC16.4■□□□□ 0.22
CHD9Q3L8U1 AL139094.1-201ENST00000405549 1188 ntBASIC16.4■□□□□ 0.22
CHD9Q3L8U1 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 AC080080.1-201ENST00000625121 2420 ntBASIC16.4■□□□□ 0.22
CHD9Q3L8U1 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 AC011742.3-201ENST00000439053 820 ntBASIC16.4■□□□□ 0.22
CHD9Q3L8U1 POU5F1P6-201ENST00000466990 990 ntBASIC16.4■□□□□ 0.22
CHD9Q3L8U1 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 AL008707.1-201ENST00000422498 534 ntBASIC16.4■□□□□ 0.22
CHD9Q3L8U1 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 AL160314.3-201ENST00000556041 767 ntBASIC16.4■□□□□ 0.22
CHD9Q3L8U1 DNM1P30-201ENST00000563586 452 ntBASIC16.4■□□□□ 0.22
CHD9Q3L8U1 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHD9Q3L8U1 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
CHD9Q3L8U1 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
CHD9Q3L8U1 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
CHD9Q3L8U1 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 AL158070.2-201ENST00000623713 1621 ntBASIC16.39■□□□□ 0.21
CHD9Q3L8U1 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 GHSR-202ENST00000427970 912 ntBASIC16.39■□□□□ 0.21
CHD9Q3L8U1 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 MIR4754-201ENST00000582477 89 ntBASIC16.39■□□□□ 0.21
CHD9Q3L8U1 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CHD9Q3L8U1 PGAM1P5-201ENST00000548011 764 ntBASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms