Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
COL9A1P20849 LINC01115-203ENST00000606068 577 ntBASIC16.19■□□□□ 0.18
COL9A1P20849 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.19■□□□□ 0.18
COL9A1P20849 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.19■□□□□ 0.18
COL9A1P20849 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
COL9A1P20849 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
COL9A1P20849 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
COL9A1P20849 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
COL9A1P20849 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 MCC-208ENST00000514701 2855 ntTSL 2 BASIC16.18■□□□□ 0.18
COL9A1P20849 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
COL9A1P20849 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
COL9A1P20849 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 NKAIN1P1-201ENST00000435754 582 ntBASIC16.18■□□□□ 0.18
COL9A1P20849 SERBP1P2-201ENST00000436888 1164 ntBASIC16.18■□□□□ 0.18
COL9A1P20849 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.18■□□□□ 0.18
COL9A1P20849 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.18■□□□□ 0.18
COL9A1P20849 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.18■□□□□ 0.18
COL9A1P20849 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC16.18■□□□□ 0.18
COL9A1P20849 AC024681.1-201ENST00000521917 487 ntBASIC16.18■□□□□ 0.18
COL9A1P20849 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC16.18■□□□□ 0.18
COL9A1P20849 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.18■□□□□ 0.18
COL9A1P20849 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.18■□□□□ 0.18
COL9A1P20849 AC121493.1-201ENST00000602316 450 ntBASIC16.18■□□□□ 0.18
COL9A1P20849 AC087045.2-201ENST00000606279 1003 ntBASIC16.18■□□□□ 0.18
COL9A1P20849 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.18■□□□□ 0.18
COL9A1P20849 MME-218ENST00000625667 363 ntTSL 5 BASIC16.18■□□□□ 0.18
COL9A1P20849 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.18■□□□□ 0.18
COL9A1P20849 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.18■□□□□ 0.18
COL9A1P20849 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.18■□□□□ 0.18
COL9A1P20849 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
COL9A1P20849 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.18■□□□□ 0.18
COL9A1P20849 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.18■□□□□ 0.18
COL9A1P20849 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL9A1P20849 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL9A1P20849 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.17■□□□□ 0.18
COL9A1P20849 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
COL9A1P20849 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.17■□□□□ 0.18
COL9A1P20849 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 AC008132.1-202ENST00000342005 1389 ntBASIC16.17■□□□□ 0.18
COL9A1P20849 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.17■□□□□ 0.18
COL9A1P20849 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.17■□□□□ 0.18
COL9A1P20849 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
COL9A1P20849 AC006001.1-201ENST00000325130 474 ntBASIC16.17■□□□□ 0.18
COL9A1P20849 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC16.17■□□□□ 0.18
COL9A1P20849 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC16.17■□□□□ 0.18
COL9A1P20849 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC16.17■□□□□ 0.18
COL9A1P20849 AL139353.2-202ENST00000502430 1213 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
COL9A1P20849 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC16.17■□□□□ 0.18
COL9A1P20849 AC110921.1-201ENST00000577544 612 ntTSL 3 BASIC16.17■□□□□ 0.18
COL9A1P20849 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL9A1P20849 CLUHP6-201ENST00000580789 941 ntBASIC16.17■□□□□ 0.18
COL9A1P20849 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.17■□□□□ 0.18
COL9A1P20849 BRI3BPP1-201ENST00000594224 787 ntBASIC16.17■□□□□ 0.18
COL9A1P20849 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.17■□□□□ 0.18
COL9A1P20849 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.17■□□□□ 0.18
COL9A1P20849 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms