Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH1Q08174 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH1Q08174 KRT8P12-202ENST00000472924 1397 ntBASIC15.35■□□□□ 0.05
PCDH1Q08174 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
PCDH1Q08174 AC018892.3-201ENST00000623986 2499 ntBASIC15.35■□□□□ 0.05
PCDH1Q08174 TSPY26P-202ENST00000565928 3884 ntBASIC15.35■□□□□ 0.05
PCDH1Q08174 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH1Q08174 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH1Q08174 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH1Q08174 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
PCDH1Q08174 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH1Q08174 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH1Q08174 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.34■□□□□ 0.05
PCDH1Q08174 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDH1Q08174 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
PCDH1Q08174 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDH1Q08174 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDH1Q08174 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PCDH1Q08174 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PCDH1Q08174 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
PCDH1Q08174 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 SPDYE7P-202ENST00000420373 878 ntBASIC15.34■□□□□ 0.05
PCDH1Q08174 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDH1Q08174 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDH1Q08174 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDH1Q08174 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.34■□□□□ 0.05
PCDH1Q08174 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.34■□□□□ 0.05
PCDH1Q08174 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.34■□□□□ 0.05
PCDH1Q08174 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.34■□□□□ 0.05
PCDH1Q08174 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.34■□□□□ 0.05
PCDH1Q08174 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PCDH1Q08174 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.34■□□□□ 0.05
PCDH1Q08174 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDH1Q08174 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PCDH1Q08174 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PCDH1Q08174 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH1Q08174 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.33■□□□□ 0.05
PCDH1Q08174 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
PCDH1Q08174 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
PCDH1Q08174 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
PCDH1Q08174 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PCDH1Q08174 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PCDH1Q08174 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
PCDH1Q08174 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.33■□□□□ 0.05
PCDH1Q08174 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
PCDH1Q08174 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
PCDH1Q08174 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.33■□□□□ 0.04
PCDH1Q08174 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PCDH1Q08174 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH1Q08174 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.33■□□□□ 0.04
PCDH1Q08174 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PCDH1Q08174 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH1Q08174 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.33■□□□□ 0.04
PCDH1Q08174 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH1Q08174 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
PCDH1Q08174 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH1Q08174 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH1Q08174 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.04
PCDH1Q08174 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH1Q08174 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH1Q08174 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH1Q08174 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.33■□□□□ 0.04
PCDH1Q08174 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.33■□□□□ 0.04
PCDH1Q08174 CNN2P11-201ENST00000429351 262 ntBASIC15.33■□□□□ 0.04
PCDH1Q08174 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.33■□□□□ 0.04
PCDH1Q08174 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH1Q08174 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.33■□□□□ 0.04
PCDH1Q08174 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.33■□□□□ 0.04
PCDH1Q08174 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PCDH1Q08174 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PCDH1Q08174 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PCDH1Q08174 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH1Q08174 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.33■□□□□ 0.04
PCDH1Q08174 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.33■□□□□ 0.04
PCDH1Q08174 AC134684.3-201ENST00000641758 218 ntBASIC15.33■□□□□ 0.04
PCDH1Q08174 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH1Q08174 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH1Q08174 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms