Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 AC000095.1-201ENST00000603208 874 ntBASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 RN7SL399P-201ENST00000471648 279 ntBASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 AP005018.1-201ENST00000525475 301 ntBASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TRIM35Q9UPQ4 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 TK1-203ENST00000588734 1681 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 AC090340.1-201ENST00000620778 4980 ntBASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 COX20P2-201ENST00000452636 358 ntBASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 AC015910.1-201ENST00000579400 975 ntBASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 AL391825.1-201ENST00000457671 1364 ntBASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
TRIM35Q9UPQ4 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 MFF-204ENST00000353339 2186 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 AC090616.6-203ENST00000579186 1945 ntBASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 DGCR5-201ENST00000399539 862 ntBASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 TAF8-206ENST00000472818 719 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 ELK1P1-201ENST00000485699 580 ntBASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 CTBP2P3-201ENST00000585629 1255 ntBASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 GPX4-206ENST00000588919 803 ntTSL 2 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms