Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 AP005018.1-201ENST00000525475 301 ntBASIC16.78■□□□□ 0.28
CDH9Q9ULB4 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 AL391069.4-201ENST00000609583 481 ntBASIC16.78■□□□□ 0.28
CDH9Q9ULB4 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CDH9Q9ULB4 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 AC093726.1-201ENST00000608064 963 ntBASIC16.77■□□□□ 0.28
CDH9Q9ULB4 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 AL158212.4-201ENST00000624062 1286 ntBASIC16.77■□□□□ 0.28
CDH9Q9ULB4 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 AC138969.3-201ENST00000546612 1459 ntBASIC16.77■□□□□ 0.28
CDH9Q9ULB4 AC138932.2-201ENST00000548268 1459 ntBASIC16.77■□□□□ 0.28
CDH9Q9ULB4 AC126755.4-201ENST00000549796 1459 ntBASIC16.77■□□□□ 0.28
CDH9Q9ULB4 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDH9Q9ULB4 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CDH9Q9ULB4 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.77■□□□□ 0.27
CDH9Q9ULB4 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CDH9Q9ULB4 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
CDH9Q9ULB4 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 AC005225.4-201ENST00000557330 545 ntBASIC16.76■□□□□ 0.27
CDH9Q9ULB4 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 AC007431.3-201ENST00000623221 587 ntBASIC16.76■□□□□ 0.27
CDH9Q9ULB4 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CDH9Q9ULB4 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms