Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC14.26□□□□□ -0.13
Col6a1Q04857 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Col6a1Q04857 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC14.26□□□□□ -0.13
Col6a1Q04857 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC14.26□□□□□ -0.13
Col6a1Q04857 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
Col6a1Q04857 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Col6a1Q04857 Gm14371-201ENSMUST00000138925 1518 ntBASIC14.25□□□□□ -0.13
Col6a1Q04857 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Col6a1Q04857 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC14.25□□□□□ -0.13
Col6a1Q04857 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Col6a1Q04857 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC14.25□□□□□ -0.13
Col6a1Q04857 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Gm45118-201ENSMUST00000208928 825 ntBASIC14.25□□□□□ -0.13
Col6a1Q04857 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Col6a1Q04857 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Col6a1Q04857 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC14.25□□□□□ -0.13
Col6a1Q04857 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col6a1Q04857 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Col6a1Q04857 AC121805.2-201ENSMUST00000218808 2538 ntBASIC14.24□□□□□ -0.13
Col6a1Q04857 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC14.24□□□□□ -0.13
Col6a1Q04857 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC14.24□□□□□ -0.13
Col6a1Q04857 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC14.24□□□□□ -0.13
Col6a1Q04857 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.24□□□□□ -0.13
Col6a1Q04857 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Col6a1Q04857 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Col6a1Q04857 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC14.24□□□□□ -0.13
Col6a1Q04857 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Col6a1Q04857 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC14.24□□□□□ -0.13
Col6a1Q04857 Gm26361-201ENSMUST00000158868 186 ntBASIC14.24□□□□□ -0.13
Col6a1Q04857 Gm9550-201ENSMUST00000161130 862 ntBASIC14.24□□□□□ -0.13
Col6a1Q04857 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC14.24□□□□□ -0.13
Col6a1Q04857 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC14.24□□□□□ -0.13
Col6a1Q04857 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC14.24□□□□□ -0.13
Col6a1Q04857 AC141438.2-201ENSMUST00000215068 271 ntBASIC14.24□□□□□ -0.13
Col6a1Q04857 Gm9004-201ENSMUST00000218739 1222 ntBASIC14.24□□□□□ -0.13
Col6a1Q04857 AC135114.1-201ENSMUST00000228682 270 ntBASIC14.24□□□□□ -0.13
Col6a1Q04857 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC14.24□□□□□ -0.13
Col6a1Q04857 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Gm45003-201ENSMUST00000205875 2158 ntBASIC14.24□□□□□ -0.13
Col6a1Q04857 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Col6a1Q04857 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col6a1Q04857 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms