Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
SDCBPO00560 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.64□□□□□ -0.23
SDCBPO00560 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.64□□□□□ -0.23
SDCBPO00560 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.64□□□□□ -0.23
SDCBPO00560 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
SDCBPO00560 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 CD99-202ENST00000381180 530 ntTSL 2 BASIC13.64□□□□□ -0.23
SDCBPO00560 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
SDCBPO00560 PMS2P4-201ENST00000412466 1052 ntBASIC13.64□□□□□ -0.23
SDCBPO00560 HCG4B-203ENST00000450128 991 ntBASIC13.64□□□□□ -0.23
SDCBPO00560 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
SDCBPO00560 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC13.64□□□□□ -0.23
SDCBPO00560 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC13.64□□□□□ -0.23
SDCBPO00560 CD63-204ENST00000546939 779 ntTSL 3 BASIC13.64□□□□□ -0.23
SDCBPO00560 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC13.64□□□□□ -0.23
SDCBPO00560 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC13.64□□□□□ -0.23
SDCBPO00560 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.64□□□□□ -0.23
SDCBPO00560 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC13.64□□□□□ -0.23
SDCBPO00560 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC13.64□□□□□ -0.23
SDCBPO00560 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC13.64□□□□□ -0.23
SDCBPO00560 AC007064.4-201ENST00000637740 555 ntBASIC13.64□□□□□ -0.23
SDCBPO00560 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 AL009178.2-201ENST00000597278 2719 ntBASIC13.64□□□□□ -0.23
SDCBPO00560 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC13.64□□□□□ -0.23
SDCBPO00560 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.64□□□□□ -0.23
SDCBPO00560 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC13.64□□□□□ -0.23
SDCBPO00560 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC13.64□□□□□ -0.23
SDCBPO00560 AC104109.2-201ENST00000602919 1418 ntBASIC13.64□□□□□ -0.23
SDCBPO00560 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SDCBPO00560 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC13.64□□□□□ -0.23
SDCBPO00560 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
SDCBPO00560 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
SDCBPO00560 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC13.63□□□□□ -0.23
SDCBPO00560 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
SDCBPO00560 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC13.63□□□□□ -0.23
SDCBPO00560 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
SDCBPO00560 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.63□□□□□ -0.23
SDCBPO00560 AC097376.2-205ENST00000610159 5334 ntBASIC13.63□□□□□ -0.23
SDCBPO00560 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
SDCBPO00560 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
SDCBPO00560 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC13.63□□□□□ -0.23
SDCBPO00560 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC13.63□□□□□ -0.23
SDCBPO00560 AC096734.2-201ENST00000562054 433 ntBASIC13.63□□□□□ -0.23
SDCBPO00560 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC13.63□□□□□ -0.23
SDCBPO00560 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC13.63□□□□□ -0.23
SDCBPO00560 AC023141.13-201ENST00000604991 943 ntBASIC13.63□□□□□ -0.23
SDCBPO00560 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC13.63□□□□□ -0.23
SDCBPO00560 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
SDCBPO00560 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.63□□□□□ -0.23
SDCBPO00560 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.63□□□□□ -0.23
SDCBPO00560 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
SDCBPO00560 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
SDCBPO00560 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC13.63□□□□□ -0.23
SDCBPO00560 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SDCBPO00560 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC13.63□□□□□ -0.23
SDCBPO00560 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC13.63□□□□□ -0.23
SDCBPO00560 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC13.62□□□□□ -0.23
SDCBPO00560 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC13.62□□□□□ -0.23
SDCBPO00560 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC13.62□□□□□ -0.23
SDCBPO00560 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC13.62□□□□□ -0.23
SDCBPO00560 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
SDCBPO00560 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
SDCBPO00560 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms