Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC084121.4-201ENST00000641598 221 ntBASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 AF228730.8-201ENST00000642140 221 ntBASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 ACTG1P14-201ENST00000446382 1122 ntBASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 PGAM5P1-201ENST00000518923 814 ntBASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 IGHV3-62-201ENST00000520057 340 ntBASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 AL450472.2-201ENST00000603663 1156 ntBASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 KRT8P37-201ENST00000451609 1420 ntBASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMCH1Q9UPQ0 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 AC127383.1-201ENST00000444697 1800 ntBASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 EEF1DP4-201ENST00000446006 880 ntBASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 TIMM8BP1-201ENST00000452384 211 ntBASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 PHKG1P2-201ENST00000457537 863 ntBASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 C18orf15-201ENST00000623680 2534 ntBASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMCH1Q9UPQ0 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms