Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
COL8A1P27658 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
COL8A1P27658 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC13.91□□□□□ -0.18
COL8A1P27658 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
COL8A1P27658 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
COL8A1P27658 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
COL8A1P27658 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC13.91□□□□□ -0.18
COL8A1P27658 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
COL8A1P27658 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC13.91□□□□□ -0.18
COL8A1P27658 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 IGF1-203ENST00000392904 761 ntTSL 5 BASIC13.91□□□□□ -0.18
COL8A1P27658 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 AL591846.1-201ENST00000451736 433 ntBASIC13.91□□□□□ -0.18
COL8A1P27658 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC13.91□□□□□ -0.18
COL8A1P27658 RN7SL769P-201ENST00000469386 295 ntBASIC13.91□□□□□ -0.18
COL8A1P27658 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 TMEM198B-204ENST00000484016 896 ntBASIC13.91□□□□□ -0.18
COL8A1P27658 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC13.91□□□□□ -0.18
COL8A1P27658 IMP3P2-201ENST00000489760 475 ntBASIC13.91□□□□□ -0.18
COL8A1P27658 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.91□□□□□ -0.18
COL8A1P27658 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.91□□□□□ -0.18
COL8A1P27658 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC13.91□□□□□ -0.18
COL8A1P27658 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC13.91□□□□□ -0.18
COL8A1P27658 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC13.91□□□□□ -0.18
COL8A1P27658 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
COL8A1P27658 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC13.91□□□□□ -0.18
COL8A1P27658 KC6-205ENST00000599934 556 ntTSL 4 BASIC13.91□□□□□ -0.18
COL8A1P27658 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.91□□□□□ -0.18
COL8A1P27658 AC005695.3-201ENST00000614522 232 ntBASIC13.91□□□□□ -0.18
COL8A1P27658 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
COL8A1P27658 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC13.91□□□□□ -0.18
COL8A1P27658 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC13.91□□□□□ -0.18
COL8A1P27658 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 KRT8P19-201ENST00000551916 1455 ntBASIC13.91□□□□□ -0.18
COL8A1P27658 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC13.91□□□□□ -0.18
COL8A1P27658 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC13.91□□□□□ -0.18
COL8A1P27658 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC13.91□□□□□ -0.18
COL8A1P27658 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL8A1P27658 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC13.9□□□□□ -0.18
COL8A1P27658 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 AL136982.4-201ENST00000437689 1740 ntBASIC13.9□□□□□ -0.18
COL8A1P27658 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC13.9□□□□□ -0.18
COL8A1P27658 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
COL8A1P27658 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
COL8A1P27658 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
COL8A1P27658 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC13.9□□□□□ -0.18
COL8A1P27658 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC13.9□□□□□ -0.18
COL8A1P27658 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.9□□□□□ -0.18
COL8A1P27658 VMO1-203ENST00000416307 712 ntTSL 2 BASIC13.9□□□□□ -0.18
COL8A1P27658 SOCS2P1-201ENST00000417727 557 ntBASIC13.9□□□□□ -0.18
COL8A1P27658 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC13.9□□□□□ -0.18
COL8A1P27658 AC012441.1-201ENST00000446669 685 ntBASIC13.9□□□□□ -0.18
COL8A1P27658 AC093433.1-201ENST00000458048 571 ntBASIC13.9□□□□□ -0.18
COL8A1P27658 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC13.9□□□□□ -0.18
COL8A1P27658 CAMTA1-205ENST00000467404 546 ntTSL 3 BASIC13.9□□□□□ -0.18
COL8A1P27658 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.9□□□□□ -0.18
COL8A1P27658 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
COL8A1P27658 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC13.9□□□□□ -0.18
COL8A1P27658 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.9□□□□□ -0.18
COL8A1P27658 AC124283.3-201ENST00000570869 594 ntBASIC13.9□□□□□ -0.18
COL8A1P27658 AC020914.3-201ENST00000594712 304 ntBASIC13.9□□□□□ -0.18
COL8A1P27658 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC13.9□□□□□ -0.18
COL8A1P27658 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms