Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col5a1O88207 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col5a1O88207 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Col5a1O88207 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col5a1O88207 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col5a1O88207 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col5a1O88207 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col5a1O88207 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col5a1O88207 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Col5a1O88207 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col5a1O88207 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC19.52■□□□□ 0.72
Col5a1O88207 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Col5a1O88207 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC19.52■□□□□ 0.72
Col5a1O88207 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col5a1O88207 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC19.52■□□□□ 0.71
Col5a1O88207 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col5a1O88207 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col5a1O88207 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col5a1O88207 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC19.51■□□□□ 0.71
Col5a1O88207 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
Col5a1O88207 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC19.51■□□□□ 0.71
Col5a1O88207 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col5a1O88207 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC19.51■□□□□ 0.71
Col5a1O88207 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col5a1O88207 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col5a1O88207 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col5a1O88207 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col5a1O88207 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col5a1O88207 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col5a1O88207 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC19.49■□□□□ 0.71
Col5a1O88207 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.49■□□□□ 0.71
Col5a1O88207 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col5a1O88207 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col5a1O88207 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col5a1O88207 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col5a1O88207 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col5a1O88207 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Col5a1O88207 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Col5a1O88207 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Col5a1O88207 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
Col5a1O88207 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col5a1O88207 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC19.48■□□□□ 0.71
Col5a1O88207 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col5a1O88207 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col5a1O88207 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col5a1O88207 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col5a1O88207 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col5a1O88207 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Col5a1O88207 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col5a1O88207 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col5a1O88207 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col5a1O88207 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC19.46■□□□□ 0.71
Col5a1O88207 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Col5a1O88207 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col5a1O88207 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Col5a1O88207 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.46■□□□□ 0.71
Col5a1O88207 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col5a1O88207 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC19.46■□□□□ 0.71
Col5a1O88207 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC19.46■□□□□ 0.71
Col5a1O88207 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col5a1O88207 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col5a1O88207 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col5a1O88207 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col5a1O88207 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col5a1O88207 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col5a1O88207 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC19.44■□□□□ 0.7
Col5a1O88207 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col5a1O88207 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col5a1O88207 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col5a1O88207 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Col5a1O88207 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col5a1O88207 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col5a1O88207 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col5a1O88207 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Col5a1O88207 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col5a1O88207 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col5a1O88207 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col5a1O88207 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC19.43■□□□□ 0.7
Col5a1O88207 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC19.43■□□□□ 0.7
Col5a1O88207 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col5a1O88207 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col5a1O88207 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col5a1O88207 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col5a1O88207 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col5a1O88207 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col5a1O88207 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col5a1O88207 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col5a1O88207 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col5a1O88207 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col5a1O88207 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col5a1O88207 Gm27011-201ENSMUST00000182352 972 ntBASIC19.41■□□□□ 0.7
Col5a1O88207 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC19.41■□□□□ 0.7
Col5a1O88207 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col5a1O88207 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col5a1O88207 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col5a1O88207 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col5a1O88207 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col5a1O88207 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.4■□□□□ 0.7
Col5a1O88207 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Col5a1O88207 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms