Protein–RNA interactions for Protein: Q9CQA6

Chchd1, Coiled-coil-helix-coiled-coil-helix domain-containing protein 1, mousemouse

Predictions only

Length 118 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chchd1Q9CQA6 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chchd1Q9CQA6 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chchd1Q9CQA6 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Chchd1Q9CQA6 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chchd1Q9CQA6 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Chchd1Q9CQA6 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Chchd1Q9CQA6 Gm15045-201ENSMUST00000117359 883 ntBASIC20.58■□□□□ 0.89
Chchd1Q9CQA6 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chchd1Q9CQA6 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Chchd1Q9CQA6 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Chchd1Q9CQA6 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chchd1Q9CQA6 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chchd1Q9CQA6 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Chchd1Q9CQA6 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Chchd1Q9CQA6 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chchd1Q9CQA6 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Chchd1Q9CQA6 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Chchd1Q9CQA6 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Chchd1Q9CQA6 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Chchd1Q9CQA6 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Chchd1Q9CQA6 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20.36■□□□□ 0.85
Chchd1Q9CQA6 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Chchd1Q9CQA6 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.34■□□□□ 0.85
Chchd1Q9CQA6 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Chchd1Q9CQA6 Gm2415-204ENSMUST00000190235 2004 ntBASIC20.33■□□□□ 0.85
Chchd1Q9CQA6 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Chchd1Q9CQA6 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Chchd1Q9CQA6 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chchd1Q9CQA6 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
Chchd1Q9CQA6 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chchd1Q9CQA6 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chchd1Q9CQA6 Gm9905-201ENSMUST00000065740 1845 ntBASIC20.25■□□□□ 0.83
Chchd1Q9CQA6 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chchd1Q9CQA6 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Chchd1Q9CQA6 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chchd1Q9CQA6 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Chchd1Q9CQA6 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chchd1Q9CQA6 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chchd1Q9CQA6 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chchd1Q9CQA6 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chchd1Q9CQA6 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Chchd1Q9CQA6 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Chchd1Q9CQA6 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Chchd1Q9CQA6 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
Chchd1Q9CQA6 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chchd1Q9CQA6 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Chchd1Q9CQA6 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Chchd1Q9CQA6 Gm6206-201ENSMUST00000133472 2199 ntBASIC20.12■□□□□ 0.81
Chchd1Q9CQA6 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Chchd1Q9CQA6 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chchd1Q9CQA6 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC20.07■□□□□ 0.8
Chchd1Q9CQA6 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Chchd1Q9CQA6 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Chchd1Q9CQA6 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Chchd1Q9CQA6 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Chchd1Q9CQA6 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Chchd1Q9CQA6 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chchd1Q9CQA6 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chchd1Q9CQA6 Gm6658-202ENSMUST00000209493 1885 ntBASIC20.02■□□□□ 0.8
Chchd1Q9CQA6 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chchd1Q9CQA6 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC19.99■□□□□ 0.79
Chchd1Q9CQA6 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Chchd1Q9CQA6 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Chchd1Q9CQA6 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Chchd1Q9CQA6 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Chchd1Q9CQA6 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Chchd1Q9CQA6 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Chchd1Q9CQA6 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Chchd1Q9CQA6 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Chchd1Q9CQA6 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Chchd1Q9CQA6 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Chchd1Q9CQA6 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Chchd1Q9CQA6 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
Chchd1Q9CQA6 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Chchd1Q9CQA6 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Chchd1Q9CQA6 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
Chchd1Q9CQA6 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Chchd1Q9CQA6 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chchd1Q9CQA6 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Chchd1Q9CQA6 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Chchd1Q9CQA6 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Chchd1Q9CQA6 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Chchd1Q9CQA6 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Chchd1Q9CQA6 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chchd1Q9CQA6 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chchd1Q9CQA6 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chchd1Q9CQA6 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Chchd1Q9CQA6 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chchd1Q9CQA6 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chchd1Q9CQA6 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Chchd1Q9CQA6 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Chchd1Q9CQA6 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
Chchd1Q9CQA6 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Chchd1Q9CQA6 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC19.77■□□□□ 0.75
Chchd1Q9CQA6 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chchd1Q9CQA6 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chchd1Q9CQA6 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chchd1Q9CQA6 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Chchd1Q9CQA6 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chchd1Q9CQA6 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms