Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC26,61■■□□□ 1,85
Lsm1Q8VC85 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC26,58■■□□□ 1,85
Lsm1Q8VC85 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC26,53■■□□□ 1,84
Lsm1Q8VC85 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC26,52■■□□□ 1,84
Lsm1Q8VC85 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC26,5■■□□□ 1,83
Lsm1Q8VC85 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC26,5■■□□□ 1,83
Lsm1Q8VC85 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC26,45■■□□□ 1,82
Lsm1Q8VC85 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC26,38■■□□□ 1,81
Lsm1Q8VC85 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC26,34■■□□□ 1,81
Lsm1Q8VC85 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC26,33■■□□□ 1,81
Lsm1Q8VC85 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC26,31■■□□□ 1,8
Lsm1Q8VC85 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC26,3■■□□□ 1,8
Lsm1Q8VC85 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC26,27■■□□□ 1,8
Lsm1Q8VC85 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC26,26■■□□□ 1,79
Lsm1Q8VC85 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC26,24■■□□□ 1,79
Lsm1Q8VC85 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC26,24■■□□□ 1,79
Lsm1Q8VC85 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC26,23■■□□□ 1,79
Lsm1Q8VC85 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC26,22■■□□□ 1,79
Lsm1Q8VC85 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC26,22■■□□□ 1,79
Lsm1Q8VC85 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC26,21■■□□□ 1,79
Lsm1Q8VC85 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC26,14■■□□□ 1,78
Lsm1Q8VC85 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC26,13■■□□□ 1,77
Lsm1Q8VC85 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC26,13■■□□□ 1,77
Lsm1Q8VC85 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC26,11■■□□□ 1,77
Lsm1Q8VC85 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC26,08■■□□□ 1,77
Lsm1Q8VC85 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC26,06■■□□□ 1,76
Lsm1Q8VC85 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC26,05■■□□□ 1,76
Lsm1Q8VC85 Rab21-202ENSMUST00000218831 843 ntBASIC26,02■■□□□ 1,76
Lsm1Q8VC85 Zfp131-207ENSMUST00000224946 1783 ntBASIC26,02■■□□□ 1,76
Lsm1Q8VC85 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC25,99■■□□□ 1,75
Lsm1Q8VC85 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC25,95■■□□□ 1,75
Lsm1Q8VC85 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC25,92■■□□□ 1,74
Lsm1Q8VC85 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC25,92■■□□□ 1,74
Lsm1Q8VC85 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC25,91■■□□□ 1,74
Lsm1Q8VC85 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC25,89■■□□□ 1,74
Lsm1Q8VC85 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC25,89■■□□□ 1,73
Lsm1Q8VC85 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC25,86■■□□□ 1,73
Lsm1Q8VC85 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC25,86■■□□□ 1,73
Lsm1Q8VC85 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC25,85■■□□□ 1,73
Lsm1Q8VC85 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC25,85■■□□□ 1,73
Lsm1Q8VC85 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC25,84■■□□□ 1,73
Lsm1Q8VC85 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC25,83■■□□□ 1,72
Lsm1Q8VC85 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC25,82■■□□□ 1,72
Lsm1Q8VC85 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC25,81■■□□□ 1,72
Lsm1Q8VC85 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC25,81■■□□□ 1,72
Lsm1Q8VC85 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC25,8■■□□□ 1,72
Lsm1Q8VC85 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC25,77■■□□□ 1,72
Lsm1Q8VC85 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC25,77■■□□□ 1,72
Lsm1Q8VC85 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC25,73■■□□□ 1,71
Lsm1Q8VC85 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC25,73■■□□□ 1,71
Lsm1Q8VC85 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC25,73■■□□□ 1,71
Lsm1Q8VC85 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC25,72■■□□□ 1,71
Lsm1Q8VC85 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25,71■■□□□ 1,71
Lsm1Q8VC85 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC25,71■■□□□ 1,71
Lsm1Q8VC85 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC25,7■■□□□ 1,7
Lsm1Q8VC85 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC25,69■■□□□ 1,7
Lsm1Q8VC85 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC25,69■■□□□ 1,7
Lsm1Q8VC85 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC25,67■■□□□ 1,7
Lsm1Q8VC85 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC25,67■■□□□ 1,7
Lsm1Q8VC85 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC25,67■■□□□ 1,7
Lsm1Q8VC85 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC25,67■■□□□ 1,7
Lsm1Q8VC85 Gm2415-204ENSMUST00000190235 2004 ntBASIC25,64■■□□□ 1,7
Lsm1Q8VC85 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC25,64■■□□□ 1,7
Lsm1Q8VC85 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC25,63■■□□□ 1,69
Lsm1Q8VC85 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC25,62■■□□□ 1,69
Lsm1Q8VC85 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC25,62■■□□□ 1,69
Lsm1Q8VC85 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC25,6■■□□□ 1,69
Lsm1Q8VC85 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC25,59■■□□□ 1,69
Lsm1Q8VC85 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC25,58■■□□□ 1,68
Lsm1Q8VC85 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC25,54■■□□□ 1,68
Lsm1Q8VC85 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC25,53■■□□□ 1,68
Lsm1Q8VC85 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC25,47■■□□□ 1,67
Lsm1Q8VC85 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC25,47■■□□□ 1,67
Lsm1Q8VC85 Gm6658-202ENSMUST00000209493 1885 ntBASIC25,45■■□□□ 1,66
Lsm1Q8VC85 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC25,42■■□□□ 1,66
Lsm1Q8VC85 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC25,42■■□□□ 1,66
Lsm1Q8VC85 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC25,42■■□□□ 1,66
Lsm1Q8VC85 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC25,41■■□□□ 1,66
Lsm1Q8VC85 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC25,4■■□□□ 1,66
Lsm1Q8VC85 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC25,34■■□□□ 1,65
Lsm1Q8VC85 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC25,34■■□□□ 1,65
Lsm1Q8VC85 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC25,31■■□□□ 1,64
Lsm1Q8VC85 AL845457.1-201ENSMUST00000197244 68 ntBASIC25,3■■□□□ 1,64
Lsm1Q8VC85 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC25,3■■□□□ 1,64
Lsm1Q8VC85 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC25,3■■□□□ 1,64
Lsm1Q8VC85 Gm25262-201ENSMUST00000174934 133 ntBASIC25,29■■□□□ 1,64
Lsm1Q8VC85 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC25,29■■□□□ 1,64
Lsm1Q8VC85 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC25,28■■□□□ 1,64
Lsm1Q8VC85 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC25,27■■□□□ 1,64
Lsm1Q8VC85 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC25,25■■□□□ 1,63
Lsm1Q8VC85 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC25,25■■□□□ 1,63
Lsm1Q8VC85 AC153504.1-201ENSMUST00000218379 2290 ntBASIC25,24■■□□□ 1,63
Lsm1Q8VC85 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25,22■■□□□ 1,63
Lsm1Q8VC85 Mipep-204ENSMUST00000225043 1548 ntBASIC25,22■■□□□ 1,63
Lsm1Q8VC85 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC25,18■■□□□ 1,62
Lsm1Q8VC85 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC25,17■■□□□ 1,62
Lsm1Q8VC85 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC25,16■■□□□ 1,62
Lsm1Q8VC85 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC25,16■■□□□ 1,62
Lsm1Q8VC85 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC25,14■■□□□ 1,62
Lsm1Q8VC85 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC25,13■■□□□ 1,61
Retrieved 100 of 76,532 protein–RNA pairs in 10,7 ms