Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Gm25239-201ENSMUST00000174915 86 ntBASIC34.25■■■■□ 3.07
Lsm1Q8VC85 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Lsm1Q8VC85 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Lsm1Q8VC85 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC32.14■■■□□ 2.74
Lsm1Q8VC85 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Lsm1Q8VC85 Psd-208ENSMUST00000224556 2034 ntBASIC31.07■■■□□ 2.56
Lsm1Q8VC85 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Lsm1Q8VC85 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Lsm1Q8VC85 Gm15042-201ENSMUST00000120212 883 ntBASIC30.64■■■□□ 2.5
Lsm1Q8VC85 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
Lsm1Q8VC85 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Lsm1Q8VC85 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Lsm1Q8VC85 Gm15045-201ENSMUST00000117359 883 ntBASIC30.11■■■□□ 2.41
Lsm1Q8VC85 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC29.99■■■□□ 2.39
Lsm1Q8VC85 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Lsm1Q8VC85 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
Lsm1Q8VC85 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
Lsm1Q8VC85 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Lsm1Q8VC85 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.31
Lsm1Q8VC85 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Lsm1Q8VC85 Gm24109-201ENSMUST00000175489 103 ntBASIC29.39■■■□□ 2.3
Lsm1Q8VC85 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.28
Lsm1Q8VC85 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Lsm1Q8VC85 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Lsm1Q8VC85 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC29.2■■■□□ 2.26
Lsm1Q8VC85 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC29.14■■■□□ 2.26
Lsm1Q8VC85 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC29.13■■■□□ 2.25
Lsm1Q8VC85 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
Lsm1Q8VC85 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC28.97■■■□□ 2.23
Lsm1Q8VC85 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC28.9■■■□□ 2.22
Lsm1Q8VC85 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC28.86■■■□□ 2.21
Lsm1Q8VC85 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Lsm1Q8VC85 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Lsm1Q8VC85 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
Lsm1Q8VC85 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
Lsm1Q8VC85 Gm23366-201ENSMUST00000175022 89 ntBASIC28.69■■■□□ 2.18
Lsm1Q8VC85 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
Lsm1Q8VC85 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Lsm1Q8VC85 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Lsm1Q8VC85 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC28.49■■■□□ 2.15
Lsm1Q8VC85 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.48■■■□□ 2.15
Lsm1Q8VC85 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
Lsm1Q8VC85 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
Lsm1Q8VC85 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC28.38■■■□□ 2.13
Lsm1Q8VC85 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.3■■■□□ 2.12
Lsm1Q8VC85 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Lsm1Q8VC85 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Lsm1Q8VC85 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
Lsm1Q8VC85 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
Lsm1Q8VC85 AC153911.1-202ENSMUST00000218534 1034 ntBASIC28.12■■■□□ 2.09
Lsm1Q8VC85 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Lsm1Q8VC85 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC27.78■■■□□ 2.04
Lsm1Q8VC85 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Lsm1Q8VC85 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Lsm1Q8VC85 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Lsm1Q8VC85 CT025624.2-201ENSMUST00000223609 1909 ntBASIC27.62■■■□□ 2.01
Lsm1Q8VC85 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC27.61■■■□□ 2.01
Lsm1Q8VC85 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Lsm1Q8VC85 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
Lsm1Q8VC85 Gm42596-201ENSMUST00000196305 1958 ntBASIC27.48■■□□□ 1.99
Lsm1Q8VC85 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
Lsm1Q8VC85 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Lsm1Q8VC85 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC27.41■■□□□ 1.98
Lsm1Q8VC85 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC27.4■■□□□ 1.98
Lsm1Q8VC85 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Lsm1Q8VC85 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
Lsm1Q8VC85 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC27.35■■□□□ 1.97
Lsm1Q8VC85 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Lsm1Q8VC85 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC27.32■■□□□ 1.96
Lsm1Q8VC85 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
Lsm1Q8VC85 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC27.26■■□□□ 1.95
Lsm1Q8VC85 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Lsm1Q8VC85 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Lsm1Q8VC85 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Lsm1Q8VC85 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC27.1■■□□□ 1.93
Lsm1Q8VC85 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Lsm1Q8VC85 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC27.09■■□□□ 1.93
Lsm1Q8VC85 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Lsm1Q8VC85 Gm27325-201ENSMUST00000175467 74 ntBASIC26.99■■□□□ 1.91
Lsm1Q8VC85 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Lsm1Q8VC85 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Lsm1Q8VC85 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Lsm1Q8VC85 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Lsm1Q8VC85 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Lsm1Q8VC85 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Lsm1Q8VC85 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Lsm1Q8VC85 Gm25238-201ENSMUST00000174914 89 ntBASIC26.81■■□□□ 1.88
Lsm1Q8VC85 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Lsm1Q8VC85 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Lsm1Q8VC85 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
Lsm1Q8VC85 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Lsm1Q8VC85 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
Lsm1Q8VC85 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
Lsm1Q8VC85 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Lsm1Q8VC85 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Lsm1Q8VC85 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC26.68■■□□□ 1.86
Lsm1Q8VC85 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC26.67■■□□□ 1.86
Lsm1Q8VC85 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC26.64■■□□□ 1.86
Lsm1Q8VC85 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Lsm1Q8VC85 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms