Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Ccdc9Q8VC31 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Ccdc9Q8VC31 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Ccdc9Q8VC31 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC32.56■■■□□ 2.8
Ccdc9Q8VC31 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC32.55■■■□□ 2.8
Ccdc9Q8VC31 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
Ccdc9Q8VC31 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC32.53■■■□□ 2.8
Ccdc9Q8VC31 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Ccdc9Q8VC31 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
Ccdc9Q8VC31 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
Ccdc9Q8VC31 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
Ccdc9Q8VC31 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.43■■■□□ 2.78
Ccdc9Q8VC31 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.4■■■□□ 2.78
Ccdc9Q8VC31 Gm23366-201ENSMUST00000175022 89 ntBASIC32.35■■■□□ 2.77
Ccdc9Q8VC31 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC32.31■■■□□ 2.76
Ccdc9Q8VC31 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
Ccdc9Q8VC31 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Ccdc9Q8VC31 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
Ccdc9Q8VC31 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.27■■■□□ 2.76
Ccdc9Q8VC31 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC32.26■■■□□ 2.75
Ccdc9Q8VC31 Gm9905-201ENSMUST00000065740 1845 ntBASIC32.21■■■□□ 2.75
Ccdc9Q8VC31 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32.19■■■□□ 2.74
Ccdc9Q8VC31 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC32.17■■■□□ 2.74
Ccdc9Q8VC31 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
Ccdc9Q8VC31 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
Ccdc9Q8VC31 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Ccdc9Q8VC31 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Ccdc9Q8VC31 CT025624.2-201ENSMUST00000223609 1909 ntBASIC32.09■■■□□ 2.73
Ccdc9Q8VC31 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
Ccdc9Q8VC31 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
Ccdc9Q8VC31 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
Ccdc9Q8VC31 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC32.05■■■□□ 2.72
Ccdc9Q8VC31 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC32.04■■■□□ 2.72
Ccdc9Q8VC31 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Ccdc9Q8VC31 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Ccdc9Q8VC31 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC31.99■■■□□ 2.71
Ccdc9Q8VC31 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Ccdc9Q8VC31 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
Ccdc9Q8VC31 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31.91■■■□□ 2.7
Ccdc9Q8VC31 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
Ccdc9Q8VC31 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Ccdc9Q8VC31 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Ccdc9Q8VC31 Gm2415-204ENSMUST00000190235 2004 ntBASIC31.85■■■□□ 2.69
Ccdc9Q8VC31 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
Ccdc9Q8VC31 Gm6206-201ENSMUST00000133472 2199 ntBASIC31.84■■■□□ 2.69
Ccdc9Q8VC31 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Ccdc9Q8VC31 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC31.82■■■□□ 2.68
Ccdc9Q8VC31 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Ccdc9Q8VC31 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
Ccdc9Q8VC31 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Ccdc9Q8VC31 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
Ccdc9Q8VC31 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC31.77■■■□□ 2.68
Ccdc9Q8VC31 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC31.77■■■□□ 2.68
Ccdc9Q8VC31 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Ccdc9Q8VC31 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
Ccdc9Q8VC31 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC31.73■■■□□ 2.67
Ccdc9Q8VC31 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Ccdc9Q8VC31 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Ccdc9Q8VC31 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Ccdc9Q8VC31 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC31.63■■■□□ 2.65
Ccdc9Q8VC31 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Ccdc9Q8VC31 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC31.61■■■□□ 2.65
Ccdc9Q8VC31 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Ccdc9Q8VC31 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC31.59■■■□□ 2.65
Ccdc9Q8VC31 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Ccdc9Q8VC31 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC31.56■■■□□ 2.64
Ccdc9Q8VC31 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC31.55■■■□□ 2.64
Ccdc9Q8VC31 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Ccdc9Q8VC31 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Ccdc9Q8VC31 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Ccdc9Q8VC31 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Ccdc9Q8VC31 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC31.49■■■□□ 2.63
Ccdc9Q8VC31 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Ccdc9Q8VC31 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Ccdc9Q8VC31 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
Ccdc9Q8VC31 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC31.45■■■□□ 2.62
Ccdc9Q8VC31 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
Ccdc9Q8VC31 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC31.44■■■□□ 2.62
Ccdc9Q8VC31 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Ccdc9Q8VC31 AC153911.1-202ENSMUST00000218534 1034 ntBASIC31.4■■■□□ 2.62
Ccdc9Q8VC31 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Ccdc9Q8VC31 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Ccdc9Q8VC31 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
Ccdc9Q8VC31 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC31.38■■■□□ 2.61
Ccdc9Q8VC31 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
Ccdc9Q8VC31 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Ccdc9Q8VC31 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Ccdc9Q8VC31 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC31.35■■■□□ 2.61
Ccdc9Q8VC31 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Ccdc9Q8VC31 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC31.32■■■□□ 2.6
Ccdc9Q8VC31 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Ccdc9Q8VC31 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC31.31■■■□□ 2.6
Ccdc9Q8VC31 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc9Q8VC31 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc9Q8VC31 Gm6658-202ENSMUST00000209493 1885 ntBASIC31.27■■■□□ 2.6
Ccdc9Q8VC31 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
Ccdc9Q8VC31 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Ccdc9Q8VC31 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
Ccdc9Q8VC31 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC31.2■■■□□ 2.59
Ccdc9Q8VC31 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms