Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC30,89■■■□□ 2,54
Trim9Q8C7M3 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC30,89■■■□□ 2,54
Trim9Q8C7M3 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC30,85■■■□□ 2,53
Trim9Q8C7M3 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30,82■■■□□ 2,52
Trim9Q8C7M3 Rab21-202ENSMUST00000218831 843 ntBASIC30,82■■■□□ 2,52
Trim9Q8C7M3 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC30,74■■■□□ 2,51
Trim9Q8C7M3 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30,73■■■□□ 2,51
Trim9Q8C7M3 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC30,7■■■□□ 2,51
Trim9Q8C7M3 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC30,7■■■□□ 2,51
Trim9Q8C7M3 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC30,69■■■□□ 2,5
Trim9Q8C7M3 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC30,65■■■□□ 2,5
Trim9Q8C7M3 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC30,63■■■□□ 2,49
Trim9Q8C7M3 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC30,61■■■□□ 2,49
Trim9Q8C7M3 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC30,59■■■□□ 2,49
Trim9Q8C7M3 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30,57■■■□□ 2,48
Trim9Q8C7M3 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30,56■■■□□ 2,48
Trim9Q8C7M3 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC30,48■■■□□ 2,47
Trim9Q8C7M3 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC30,45■■■□□ 2,47
Trim9Q8C7M3 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC30,45■■■□□ 2,47
Trim9Q8C7M3 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30,44■■■□□ 2,46
Trim9Q8C7M3 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC30,44■■■□□ 2,46
Trim9Q8C7M3 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC30,41■■■□□ 2,46
Trim9Q8C7M3 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC30,41■■■□□ 2,46
Trim9Q8C7M3 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC30,39■■■□□ 2,46
Trim9Q8C7M3 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30,36■■■□□ 2,45
Trim9Q8C7M3 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30,34■■■□□ 2,45
Trim9Q8C7M3 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC30,31■■■□□ 2,44
Trim9Q8C7M3 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC30,29■■■□□ 2,44
Trim9Q8C7M3 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC30,29■■■□□ 2,44
Trim9Q8C7M3 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC30,27■■■□□ 2,44
Trim9Q8C7M3 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC30,27■■■□□ 2,44
Trim9Q8C7M3 Zfp131-207ENSMUST00000224946 1783 ntBASIC30,26■■■□□ 2,44
Trim9Q8C7M3 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC30,25■■■□□ 2,43
Trim9Q8C7M3 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30,25■■■□□ 2,43
Trim9Q8C7M3 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC30,24■■■□□ 2,43
Trim9Q8C7M3 Gm25262-201ENSMUST00000174934 133 ntBASIC30,24■■■□□ 2,43
Trim9Q8C7M3 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30,24■■■□□ 2,43
Trim9Q8C7M3 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC30,22■■■□□ 2,43
Trim9Q8C7M3 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC30,17■■■□□ 2,42
Trim9Q8C7M3 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC30,17■■■□□ 2,42
Trim9Q8C7M3 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC30,17■■■□□ 2,42
Trim9Q8C7M3 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC30,13■■■□□ 2,41
Trim9Q8C7M3 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC30,08■■■□□ 2,41
Trim9Q8C7M3 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC30,08■■■□□ 2,41
Trim9Q8C7M3 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC30,06■■■□□ 2,4
Trim9Q8C7M3 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC30,03■■■□□ 2,4
Trim9Q8C7M3 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC30,01■■■□□ 2,39
Trim9Q8C7M3 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC30,01■■■□□ 2,39
Trim9Q8C7M3 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC29,99■■■□□ 2,39
Trim9Q8C7M3 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC29,98■■■□□ 2,39
Trim9Q8C7M3 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC29,95■■■□□ 2,39
Trim9Q8C7M3 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC29,92■■■□□ 2,38
Trim9Q8C7M3 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC29,88■■■□□ 2,37
Trim9Q8C7M3 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC29,85■■■□□ 2,37
Trim9Q8C7M3 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC29,84■■■□□ 2,37
Trim9Q8C7M3 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC29,79■■■□□ 2,36
Trim9Q8C7M3 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC29,79■■■□□ 2,36
Trim9Q8C7M3 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC29,79■■■□□ 2,36
Trim9Q8C7M3 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC29,78■■■□□ 2,36
Trim9Q8C7M3 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC29,74■■■□□ 2,35
Trim9Q8C7M3 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC29,71■■■□□ 2,35
Trim9Q8C7M3 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC29,71■■■□□ 2,35
Trim9Q8C7M3 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC29,7■■■□□ 2,35
Trim9Q8C7M3 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC29,7■■■□□ 2,35
Trim9Q8C7M3 AL845457.1-201ENSMUST00000197244 68 ntBASIC29,69■■■□□ 2,34
Trim9Q8C7M3 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC29,65■■■□□ 2,34
Trim9Q8C7M3 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC29,64■■■□□ 2,34
Trim9Q8C7M3 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC29,62■■■□□ 2,33
Trim9Q8C7M3 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC29,62■■■□□ 2,33
Trim9Q8C7M3 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC29,59■■■□□ 2,33
Trim9Q8C7M3 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC29,57■■■□□ 2,32
Trim9Q8C7M3 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC29,54■■■□□ 2,32
Trim9Q8C7M3 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC29,53■■■□□ 2,32
Trim9Q8C7M3 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC29,53■■■□□ 2,32
Trim9Q8C7M3 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC29,52■■■□□ 2,32
Trim9Q8C7M3 Gm17082-201ENSMUST00000166043 1091 ntBASIC29,52■■■□□ 2,32
Trim9Q8C7M3 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC29,52■■■□□ 2,32
Trim9Q8C7M3 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC29,47■■■□□ 2,31
Trim9Q8C7M3 Gm2415-204ENSMUST00000190235 2004 ntBASIC29,46■■■□□ 2,31
Trim9Q8C7M3 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC29,45■■■□□ 2,31
Trim9Q8C7M3 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC29,45■■■□□ 2,31
Trim9Q8C7M3 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC29,43■■■□□ 2,3
Trim9Q8C7M3 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC29,43■■■□□ 2,3
Trim9Q8C7M3 Mipep-204ENSMUST00000225043 1548 ntBASIC29,42■■■□□ 2,3
Trim9Q8C7M3 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC29,42■■■□□ 2,3
Trim9Q8C7M3 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC29,42■■■□□ 2,3
Trim9Q8C7M3 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC29,41■■■□□ 2,3
Trim9Q8C7M3 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC29,4■■■□□ 2,3
Trim9Q8C7M3 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC29,4■■■□□ 2,3
Trim9Q8C7M3 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC29,37■■■□□ 2,29
Trim9Q8C7M3 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC29,37■■■□□ 2,29
Trim9Q8C7M3 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC29,35■■■□□ 2,29
Trim9Q8C7M3 Gm27322-201ENSMUST00000184007 104 ntBASIC29,35■■■□□ 2,29
Trim9Q8C7M3 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC29,35■■■□□ 2,29
Trim9Q8C7M3 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC29,32■■■□□ 2,28
Trim9Q8C7M3 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC29,3■■■□□ 2,28
Trim9Q8C7M3 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC29,28■■■□□ 2,28
Trim9Q8C7M3 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC29,25■■■□□ 2,27
Trim9Q8C7M3 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC29,22■■■□□ 2,27
Trim9Q8C7M3 Gm26115-201ENSMUST00000175605 87 ntBASIC29,22■■■□□ 2,27
Retrieved 100 of 76,532 protein–RNA pairs in 11,9 ms