Protein–RNA interactions for Protein: Q8C6S9

Cfap54, Cilia- and flagella-associated protein 54, mousemouse

Predictions only

Length 3,106 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cfap54Q8C6S9 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Cfap54Q8C6S9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC27.69■■■□□ 2.02
Cfap54Q8C6S9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Cfap54Q8C6S9 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC27.67■■■□□ 2.02
Cfap54Q8C6S9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC27.65■■■□□ 2.02
Cfap54Q8C6S9 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC27.6■■■□□ 2.01
Cfap54Q8C6S9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC27.59■■■□□ 2.01
Cfap54Q8C6S9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Cfap54Q8C6S9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC27.54■■■□□ 2
Cfap54Q8C6S9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC27.53■■■□□ 2
Cfap54Q8C6S9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Cfap54Q8C6S9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
Cfap54Q8C6S9 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
Cfap54Q8C6S9 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC27.44■■□□□ 1.98
Cfap54Q8C6S9 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
Cfap54Q8C6S9 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Cfap54Q8C6S9 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Cfap54Q8C6S9 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Cfap54Q8C6S9 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
Cfap54Q8C6S9 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
Cfap54Q8C6S9 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Cfap54Q8C6S9 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Cfap54Q8C6S9 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Cfap54Q8C6S9 Gm10524-201ENSMUST00000181931 1893 ntBASIC27.22■■□□□ 1.95
Cfap54Q8C6S9 Gm42596-201ENSMUST00000196305 1958 ntBASIC27.21■■□□□ 1.95
Cfap54Q8C6S9 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
Cfap54Q8C6S9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Cfap54Q8C6S9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Cfap54Q8C6S9 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
Cfap54Q8C6S9 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Cfap54Q8C6S9 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC27.16■■□□□ 1.94
Cfap54Q8C6S9 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Cfap54Q8C6S9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Cfap54Q8C6S9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC27.12■■□□□ 1.93
Cfap54Q8C6S9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Cfap54Q8C6S9 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Cfap54Q8C6S9 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC27.1■■□□□ 1.93
Cfap54Q8C6S9 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Cfap54Q8C6S9 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
Cfap54Q8C6S9 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC27.06■■□□□ 1.92
Cfap54Q8C6S9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Cfap54Q8C6S9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Cfap54Q8C6S9 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
Cfap54Q8C6S9 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Cfap54Q8C6S9 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Cfap54Q8C6S9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Cfap54Q8C6S9 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Cfap54Q8C6S9 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC26.95■■□□□ 1.91
Cfap54Q8C6S9 AC166822.3-201ENSMUST00000227394 661 ntBASIC26.92■■□□□ 1.9
Cfap54Q8C6S9 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC26.9■■□□□ 1.9
Cfap54Q8C6S9 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Cfap54Q8C6S9 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC26.86■■□□□ 1.89
Cfap54Q8C6S9 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
Cfap54Q8C6S9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC26.84■■□□□ 1.89
Cfap54Q8C6S9 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Cfap54Q8C6S9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Cfap54Q8C6S9 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC26.8■■□□□ 1.88
Cfap54Q8C6S9 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Cfap54Q8C6S9 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Cfap54Q8C6S9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
Cfap54Q8C6S9 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Cfap54Q8C6S9 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC26.78■■□□□ 1.88
Cfap54Q8C6S9 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Cfap54Q8C6S9 Gm16148-201ENSMUST00000119653 893 ntBASIC26.75■■□□□ 1.87
Cfap54Q8C6S9 Tdp2-203ENSMUST00000223804 1136 ntBASIC26.69■■□□□ 1.86
Cfap54Q8C6S9 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC26.69■■□□□ 1.86
Cfap54Q8C6S9 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
Cfap54Q8C6S9 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC26.68■■□□□ 1.86
Cfap54Q8C6S9 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Cfap54Q8C6S9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Cfap54Q8C6S9 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC26.62■■□□□ 1.85
Cfap54Q8C6S9 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Cfap54Q8C6S9 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Cfap54Q8C6S9 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Cfap54Q8C6S9 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
Cfap54Q8C6S9 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
Cfap54Q8C6S9 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC26.52■■□□□ 1.84
Cfap54Q8C6S9 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Cfap54Q8C6S9 AL845457.1-201ENSMUST00000197244 68 ntBASIC26.52■■□□□ 1.84
Cfap54Q8C6S9 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Cfap54Q8C6S9 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
Cfap54Q8C6S9 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Cfap54Q8C6S9 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC26.47■■□□□ 1.83
Cfap54Q8C6S9 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC26.46■■□□□ 1.83
Cfap54Q8C6S9 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Cfap54Q8C6S9 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC26.43■■□□□ 1.82
Cfap54Q8C6S9 Gm45855-201ENSMUST00000212546 880 ntBASIC26.43■■□□□ 1.82
Cfap54Q8C6S9 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Cfap54Q8C6S9 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC26.4■■□□□ 1.82
Cfap54Q8C6S9 Gm5987-201ENSMUST00000196433 1151 ntBASIC26.4■■□□□ 1.82
Cfap54Q8C6S9 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.82
Cfap54Q8C6S9 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
Cfap54Q8C6S9 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Cfap54Q8C6S9 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC26.38■■□□□ 1.81
Cfap54Q8C6S9 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Cfap54Q8C6S9 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC26.36■■□□□ 1.81
Cfap54Q8C6S9 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Cfap54Q8C6S9 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
Cfap54Q8C6S9 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Cfap54Q8C6S9 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms