Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
Col6a6Q8C6K9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
Col6a6Q8C6K9 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Col6a6Q8C6K9 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC25.81■■□□□ 1.72
Col6a6Q8C6K9 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Col6a6Q8C6K9 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Col6a6Q8C6K9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Col6a6Q8C6K9 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC25.71■■□□□ 1.71
Col6a6Q8C6K9 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Col6a6Q8C6K9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Col6a6Q8C6K9 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC25.63■■□□□ 1.69
Col6a6Q8C6K9 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Col6a6Q8C6K9 Zfp131-205ENSMUST00000223812 663 ntBASIC25.62■■□□□ 1.69
Col6a6Q8C6K9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Col6a6Q8C6K9 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Col6a6Q8C6K9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Col6a6Q8C6K9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Col6a6Q8C6K9 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Col6a6Q8C6K9 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Col6a6Q8C6K9 Gm42596-201ENSMUST00000196305 1958 ntBASIC25.52■■□□□ 1.68
Col6a6Q8C6K9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Col6a6Q8C6K9 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Col6a6Q8C6K9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Col6a6Q8C6K9 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC25.45■■□□□ 1.66
Col6a6Q8C6K9 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
Col6a6Q8C6K9 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Col6a6Q8C6K9 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Col6a6Q8C6K9 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
Col6a6Q8C6K9 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Col6a6Q8C6K9 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Col6a6Q8C6K9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC25.33■■□□□ 1.64
Col6a6Q8C6K9 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
Col6a6Q8C6K9 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Col6a6Q8C6K9 Gm10524-201ENSMUST00000181931 1893 ntBASIC25.31■■□□□ 1.64
Col6a6Q8C6K9 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC25.31■■□□□ 1.64
Col6a6Q8C6K9 AC166822.3-201ENSMUST00000227394 661 ntBASIC25.26■■□□□ 1.63
Col6a6Q8C6K9 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Col6a6Q8C6K9 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Col6a6Q8C6K9 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
Col6a6Q8C6K9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Col6a6Q8C6K9 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Col6a6Q8C6K9 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC25.21■■□□□ 1.63
Col6a6Q8C6K9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
Col6a6Q8C6K9 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
Col6a6Q8C6K9 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC25.15■■□□□ 1.62
Col6a6Q8C6K9 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Col6a6Q8C6K9 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Col6a6Q8C6K9 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Col6a6Q8C6K9 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Col6a6Q8C6K9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
Col6a6Q8C6K9 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC25.11■■□□□ 1.61
Col6a6Q8C6K9 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
Col6a6Q8C6K9 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Col6a6Q8C6K9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Col6a6Q8C6K9 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
Col6a6Q8C6K9 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC25■■□□□ 1.59
Col6a6Q8C6K9 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC25■■□□□ 1.59
Col6a6Q8C6K9 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC24.99■■□□□ 1.59
Col6a6Q8C6K9 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Col6a6Q8C6K9 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Col6a6Q8C6K9 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC24.95■■□□□ 1.58
Col6a6Q8C6K9 AL845457.1-201ENSMUST00000197244 68 ntBASIC24.93■■□□□ 1.58
Col6a6Q8C6K9 Tdp2-203ENSMUST00000223804 1136 ntBASIC24.91■■□□□ 1.58
Col6a6Q8C6K9 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Col6a6Q8C6K9 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
Col6a6Q8C6K9 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
Col6a6Q8C6K9 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Col6a6Q8C6K9 Gm16148-201ENSMUST00000119653 893 ntBASIC24.83■■□□□ 1.57
Col6a6Q8C6K9 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Col6a6Q8C6K9 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
Col6a6Q8C6K9 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Col6a6Q8C6K9 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC24.75■■□□□ 1.55
Col6a6Q8C6K9 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
Col6a6Q8C6K9 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.75■■□□□ 1.55
Col6a6Q8C6K9 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
Col6a6Q8C6K9 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Col6a6Q8C6K9 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC24.72■■□□□ 1.55
Col6a6Q8C6K9 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
Col6a6Q8C6K9 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
Col6a6Q8C6K9 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
Col6a6Q8C6K9 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC24.69■■□□□ 1.54
Col6a6Q8C6K9 Zfp131-207ENSMUST00000224946 1783 ntBASIC24.67■■□□□ 1.54
Col6a6Q8C6K9 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC24.67■■□□□ 1.54
Col6a6Q8C6K9 Peli2-204ENSMUST00000226513 1320 ntBASIC24.67■■□□□ 1.54
Col6a6Q8C6K9 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Col6a6Q8C6K9 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
Col6a6Q8C6K9 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Col6a6Q8C6K9 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC24.64■■□□□ 1.53
Col6a6Q8C6K9 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Col6a6Q8C6K9 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Col6a6Q8C6K9 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC24.63■■□□□ 1.53
Col6a6Q8C6K9 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Col6a6Q8C6K9 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Col6a6Q8C6K9 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Col6a6Q8C6K9 Gm45855-201ENSMUST00000212546 880 ntBASIC24.54■■□□□ 1.52
Col6a6Q8C6K9 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
Col6a6Q8C6K9 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Col6a6Q8C6K9 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
Col6a6Q8C6K9 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
Col6a6Q8C6K9 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC24.49■■□□□ 1.51
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms