Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC39.38■■■■□ 3.89
Usp40Q8BWR4 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC39.38■■■■□ 3.89
Usp40Q8BWR4 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC39.38■■■■□ 3.89
Usp40Q8BWR4 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC39.31■■■■□ 3.88
Usp40Q8BWR4 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC39.25■■■■□ 3.87
Usp40Q8BWR4 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
Usp40Q8BWR4 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC39.22■■■■□ 3.87
Usp40Q8BWR4 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC39.21■■■■□ 3.87
Usp40Q8BWR4 Gm17082-201ENSMUST00000166043 1091 ntBASIC39.21■■■■□ 3.87
Usp40Q8BWR4 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC39.18■■■■□ 3.86
Usp40Q8BWR4 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC39.03■■■■□ 3.84
Usp40Q8BWR4 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC38.97■■■■□ 3.83
Usp40Q8BWR4 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC38.96■■■■□ 3.83
Usp40Q8BWR4 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC38.94■■■■□ 3.82
Usp40Q8BWR4 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC38.94■■■■□ 3.82
Usp40Q8BWR4 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC38.91■■■■□ 3.82
Usp40Q8BWR4 Gm27322-201ENSMUST00000184007 104 ntBASIC38.87■■■■□ 3.81
Usp40Q8BWR4 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC38.84■■■■□ 3.81
Usp40Q8BWR4 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC38.82■■■■□ 3.81
Usp40Q8BWR4 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC38.8■■■■□ 3.8
Usp40Q8BWR4 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC38.75■■■■□ 3.79
Usp40Q8BWR4 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC38.75■■■■□ 3.79
Usp40Q8BWR4 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC38.72■■■■□ 3.79
Usp40Q8BWR4 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC38.71■■■■□ 3.79
Usp40Q8BWR4 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC38.57■■■■□ 3.77
Usp40Q8BWR4 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC38.54■■■■□ 3.76
Usp40Q8BWR4 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC38.53■■■■□ 3.76
Usp40Q8BWR4 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC38.53■■■■□ 3.76
Usp40Q8BWR4 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC38.52■■■■□ 3.76
Usp40Q8BWR4 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC38.51■■■■□ 3.76
Usp40Q8BWR4 Gm24804-201ENSMUST00000174982 85 ntBASIC38.49■■■■□ 3.75
Usp40Q8BWR4 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC38.46■■■■□ 3.75
Usp40Q8BWR4 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC38.45■■■■□ 3.75
Usp40Q8BWR4 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC38.44■■■■□ 3.74
Usp40Q8BWR4 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC38.38■■■■□ 3.73
Usp40Q8BWR4 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC38.38■■■■□ 3.73
Usp40Q8BWR4 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC38.36■■■■□ 3.73
Usp40Q8BWR4 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC38.36■■■■□ 3.73
Usp40Q8BWR4 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC38.34■■■■□ 3.73
Usp40Q8BWR4 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC38.23■■■■□ 3.71
Usp40Q8BWR4 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC38.22■■■■□ 3.71
Usp40Q8BWR4 AL845457.1-201ENSMUST00000197244 68 ntBASIC38.22■■■■□ 3.71
Usp40Q8BWR4 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC38.22■■■■□ 3.71
Usp40Q8BWR4 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC38.2■■■■□ 3.71
Usp40Q8BWR4 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC38.17■■■■□ 3.7
Usp40Q8BWR4 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC38.15■■■■□ 3.7
Usp40Q8BWR4 AC166822.3-201ENSMUST00000227394 661 ntBASIC38.11■■■■□ 3.69
Usp40Q8BWR4 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC38.09■■■■□ 3.69
Usp40Q8BWR4 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC38.08■■■■□ 3.69
Usp40Q8BWR4 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC38.05■■■■□ 3.68
Usp40Q8BWR4 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC38.04■■■■□ 3.68
Usp40Q8BWR4 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC38.03■■■■□ 3.68
Usp40Q8BWR4 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC38.01■■■■□ 3.67
Usp40Q8BWR4 Zfp131-207ENSMUST00000224946 1783 ntBASIC38.01■■■■□ 3.67
Usp40Q8BWR4 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC37.97■■■■□ 3.67
Usp40Q8BWR4 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC37.86■■■■□ 3.65
Usp40Q8BWR4 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC37.85■■■■□ 3.65
Usp40Q8BWR4 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC37.83■■■■□ 3.65
Usp40Q8BWR4 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC37.81■■■■□ 3.64
Usp40Q8BWR4 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC37.8■■■■□ 3.64
Usp40Q8BWR4 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC37.76■■■■□ 3.64
Usp40Q8BWR4 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC37.75■■■■□ 3.63
Usp40Q8BWR4 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC37.75■■■■□ 3.63
Usp40Q8BWR4 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC37.74■■■■□ 3.63
Usp40Q8BWR4 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC37.71■■■■□ 3.63
Usp40Q8BWR4 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC37.71■■■■□ 3.63
Usp40Q8BWR4 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC37.71■■■■□ 3.63
Usp40Q8BWR4 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC37.68■■■■□ 3.62
Usp40Q8BWR4 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC37.67■■■■□ 3.62
Usp40Q8BWR4 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC37.66■■■■□ 3.62
Usp40Q8BWR4 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC37.66■■■■□ 3.62
Usp40Q8BWR4 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC37.59■■■■□ 3.61
Usp40Q8BWR4 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC37.53■■■■□ 3.6
Usp40Q8BWR4 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC37.52■■■■□ 3.6
Usp40Q8BWR4 Zfp131-205ENSMUST00000223812 663 ntBASIC37.48■■■■□ 3.59
Usp40Q8BWR4 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC37.42■■■■□ 3.58
Usp40Q8BWR4 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC37.39■■■■□ 3.58
Usp40Q8BWR4 Mipep-204ENSMUST00000225043 1548 ntBASIC37.35■■■■□ 3.57
Usp40Q8BWR4 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC37.33■■■■□ 3.57
Usp40Q8BWR4 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC37.32■■■■□ 3.57
Usp40Q8BWR4 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC37.32■■■■□ 3.56
Usp40Q8BWR4 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC37.32■■■■□ 3.56
Usp40Q8BWR4 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC37.3■■■■□ 3.56
Usp40Q8BWR4 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC37.29■■■■□ 3.56
Usp40Q8BWR4 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC37.29■■■■□ 3.56
Usp40Q8BWR4 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC37.28■■■■□ 3.56
Usp40Q8BWR4 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC37.26■■■■□ 3.56
Usp40Q8BWR4 Peli2-204ENSMUST00000226513 1320 ntBASIC37.26■■■■□ 3.56
Usp40Q8BWR4 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC37.24■■■■□ 3.55
Usp40Q8BWR4 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC37.24■■■■□ 3.55
Usp40Q8BWR4 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC37.21■■■■□ 3.55
Usp40Q8BWR4 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC37.21■■■■□ 3.55
Usp40Q8BWR4 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC37.2■■■■□ 3.55
Usp40Q8BWR4 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC37.19■■■■□ 3.54
Usp40Q8BWR4 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC37.18■■■■□ 3.54
Usp40Q8BWR4 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC37.17■■■■□ 3.54
Usp40Q8BWR4 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC37.16■■■■□ 3.54
Usp40Q8BWR4 Gm16148-201ENSMUST00000119653 893 ntBASIC37.16■■■■□ 3.54
Usp40Q8BWR4 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC37.16■■■■□ 3.54
Usp40Q8BWR4 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC37.15■■■■□ 3.54
Retrieved 100 of 76,532 protein–RNA pairs in 10.5 ms