Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC27.49■■□□□ 1.99
Ubfd1Q78JW9 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Ubfd1Q78JW9 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC27.47■■□□□ 1.99
Ubfd1Q78JW9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
Ubfd1Q78JW9 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Ubfd1Q78JW9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Ubfd1Q78JW9 Gm8109-201ENSMUST00000194076 746 ntBASIC27.4■■□□□ 1.98
Ubfd1Q78JW9 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
Ubfd1Q78JW9 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
Ubfd1Q78JW9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Ubfd1Q78JW9 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Ubfd1Q78JW9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
Ubfd1Q78JW9 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Ubfd1Q78JW9 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Ubfd1Q78JW9 Gm17082-201ENSMUST00000166043 1091 ntBASIC27.21■■□□□ 1.95
Ubfd1Q78JW9 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Ubfd1Q78JW9 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC27.2■■□□□ 1.94
Ubfd1Q78JW9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Ubfd1Q78JW9 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Ubfd1Q78JW9 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Ubfd1Q78JW9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC27.13■■□□□ 1.93
Ubfd1Q78JW9 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC27.13■■□□□ 1.93
Ubfd1Q78JW9 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Ubfd1Q78JW9 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Ubfd1Q78JW9 Gm27322-201ENSMUST00000184007 104 ntBASIC27.06■■□□□ 1.92
Ubfd1Q78JW9 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
Ubfd1Q78JW9 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
Ubfd1Q78JW9 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
Ubfd1Q78JW9 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC26.91■■□□□ 1.9
Ubfd1Q78JW9 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC26.89■■□□□ 1.9
Ubfd1Q78JW9 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC26.86■■□□□ 1.89
Ubfd1Q78JW9 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC26.83■■□□□ 1.89
Ubfd1Q78JW9 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Ubfd1Q78JW9 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.87
Ubfd1Q78JW9 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Ubfd1Q78JW9 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Ubfd1Q78JW9 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Ubfd1Q78JW9 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
Ubfd1Q78JW9 AL845457.1-201ENSMUST00000197244 68 ntBASIC26.7■■□□□ 1.86
Ubfd1Q78JW9 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Ubfd1Q78JW9 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.86
Ubfd1Q78JW9 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Ubfd1Q78JW9 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ubfd1Q78JW9 Zfp131-207ENSMUST00000224946 1783 ntBASIC26.63■■□□□ 1.85
Ubfd1Q78JW9 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
Ubfd1Q78JW9 AC166822.3-201ENSMUST00000227394 661 ntBASIC26.61■■□□□ 1.85
Ubfd1Q78JW9 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ubfd1Q78JW9 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Ubfd1Q78JW9 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC26.58■■□□□ 1.85
Ubfd1Q78JW9 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC26.57■■□□□ 1.84
Ubfd1Q78JW9 Gm24804-201ENSMUST00000174982 85 ntBASIC26.57■■□□□ 1.84
Ubfd1Q78JW9 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Ubfd1Q78JW9 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ubfd1Q78JW9 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ubfd1Q78JW9 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ubfd1Q78JW9 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC26.52■■□□□ 1.84
Ubfd1Q78JW9 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC26.51■■□□□ 1.83
Ubfd1Q78JW9 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC26.49■■□□□ 1.83
Ubfd1Q78JW9 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Ubfd1Q78JW9 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Ubfd1Q78JW9 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
Ubfd1Q78JW9 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ubfd1Q78JW9 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Ubfd1Q78JW9 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Ubfd1Q78JW9 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Ubfd1Q78JW9 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Ubfd1Q78JW9 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ubfd1Q78JW9 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ubfd1Q78JW9 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ubfd1Q78JW9 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
Ubfd1Q78JW9 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ubfd1Q78JW9 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Ubfd1Q78JW9 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Ubfd1Q78JW9 Mipep-204ENSMUST00000225043 1548 ntBASIC26.17■■□□□ 1.78
Ubfd1Q78JW9 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Ubfd1Q78JW9 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
Ubfd1Q78JW9 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Ubfd1Q78JW9 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Ubfd1Q78JW9 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Ubfd1Q78JW9 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
Ubfd1Q78JW9 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Ubfd1Q78JW9 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC26.12■■□□□ 1.77
Ubfd1Q78JW9 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Ubfd1Q78JW9 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Ubfd1Q78JW9 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Ubfd1Q78JW9 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Ubfd1Q78JW9 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Ubfd1Q78JW9 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Ubfd1Q78JW9 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Ubfd1Q78JW9 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC26■■□□□ 1.75
Ubfd1Q78JW9 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC26■■□□□ 1.75
Ubfd1Q78JW9 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC25.98■■□□□ 1.75
Ubfd1Q78JW9 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC25.98■■□□□ 1.75
Ubfd1Q78JW9 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Ubfd1Q78JW9 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Ubfd1Q78JW9 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Ubfd1Q78JW9 Peli2-204ENSMUST00000226513 1320 ntBASIC25.95■■□□□ 1.75
Ubfd1Q78JW9 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
Ubfd1Q78JW9 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Ubfd1Q78JW9 Gm16148-201ENSMUST00000119653 893 ntBASIC25.9■■□□□ 1.74
Retrieved 100 of 76,532 protein–RNA pairs in 92.5 ms