Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC29.02■■■□□ 2.24
Col12a1Q60847 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
Col12a1Q60847 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC29■■■□□ 2.23
Col12a1Q60847 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC28.98■■■□□ 2.23
Col12a1Q60847 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
Col12a1Q60847 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
Col12a1Q60847 Psd-208ENSMUST00000224556 2034 ntBASIC28.89■■■□□ 2.22
Col12a1Q60847 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC28.89■■■□□ 2.22
Col12a1Q60847 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.84■■■□□ 2.21
Col12a1Q60847 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC28.8■■■□□ 2.2
Col12a1Q60847 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC28.79■■■□□ 2.2
Col12a1Q60847 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC28.76■■■□□ 2.2
Col12a1Q60847 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Col12a1Q60847 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
Col12a1Q60847 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
Col12a1Q60847 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Col12a1Q60847 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC28.67■■■□□ 2.18
Col12a1Q60847 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Col12a1Q60847 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Col12a1Q60847 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Col12a1Q60847 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.55■■■□□ 2.16
Col12a1Q60847 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Col12a1Q60847 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
Col12a1Q60847 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC28.52■■■□□ 2.16
Col12a1Q60847 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
Col12a1Q60847 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC28.51■■■□□ 2.15
Col12a1Q60847 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Col12a1Q60847 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.44■■■□□ 2.14
Col12a1Q60847 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC28.41■■■□□ 2.14
Col12a1Q60847 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.4■■■□□ 2.14
Col12a1Q60847 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC28.38■■■□□ 2.13
Col12a1Q60847 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Col12a1Q60847 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Col12a1Q60847 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC28.34■■■□□ 2.13
Col12a1Q60847 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Col12a1Q60847 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
Col12a1Q60847 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Col12a1Q60847 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
Col12a1Q60847 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC28.23■■■□□ 2.11
Col12a1Q60847 Tdp2-203ENSMUST00000223804 1136 ntBASIC28.23■■■□□ 2.11
Col12a1Q60847 Gm5987-201ENSMUST00000196433 1151 ntBASIC28.23■■■□□ 2.11
Col12a1Q60847 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
Col12a1Q60847 AC166822.3-201ENSMUST00000227394 661 ntBASIC28.21■■■□□ 2.11
Col12a1Q60847 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
Col12a1Q60847 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Col12a1Q60847 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
Col12a1Q60847 Gm16148-201ENSMUST00000119653 893 ntBASIC28.15■■■□□ 2.1
Col12a1Q60847 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC28.14■■■□□ 2.1
Col12a1Q60847 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Col12a1Q60847 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC28.12■■■□□ 2.09
Col12a1Q60847 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Col12a1Q60847 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Col12a1Q60847 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
Col12a1Q60847 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC28.06■■■□□ 2.08
Col12a1Q60847 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC28.06■■■□□ 2.08
Col12a1Q60847 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
Col12a1Q60847 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Col12a1Q60847 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.04■■■□□ 2.08
Col12a1Q60847 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
Col12a1Q60847 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Col12a1Q60847 Gm42596-201ENSMUST00000196305 1958 ntBASIC28.02■■■□□ 2.08
Col12a1Q60847 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC28.01■■■□□ 2.08
Col12a1Q60847 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Col12a1Q60847 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC28.01■■■□□ 2.07
Col12a1Q60847 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC27.98■■■□□ 2.07
Col12a1Q60847 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
Col12a1Q60847 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC27.95■■■□□ 2.07
Col12a1Q60847 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC27.95■■■□□ 2.07
Col12a1Q60847 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Col12a1Q60847 Gm45855-201ENSMUST00000212546 880 ntBASIC27.93■■■□□ 2.06
Col12a1Q60847 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
Col12a1Q60847 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Col12a1Q60847 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Col12a1Q60847 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC27.9■■■□□ 2.06
Col12a1Q60847 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
Col12a1Q60847 CT025624.2-201ENSMUST00000223609 1909 ntBASIC27.87■■■□□ 2.05
Col12a1Q60847 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
Col12a1Q60847 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Col12a1Q60847 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC27.82■■■□□ 2.04
Col12a1Q60847 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC27.82■■■□□ 2.04
Col12a1Q60847 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
Col12a1Q60847 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC27.78■■■□□ 2.04
Col12a1Q60847 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC27.77■■■□□ 2.04
Col12a1Q60847 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC27.77■■■□□ 2.04
Col12a1Q60847 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
Col12a1Q60847 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC27.74■■■□□ 2.03
Col12a1Q60847 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
Col12a1Q60847 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC27.72■■■□□ 2.03
Col12a1Q60847 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Col12a1Q60847 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.03
Col12a1Q60847 AL845457.1-201ENSMUST00000197244 68 ntBASIC27.69■■■□□ 2.02
Col12a1Q60847 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Col12a1Q60847 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
Col12a1Q60847 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC27.65■■■□□ 2.02
Col12a1Q60847 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC27.62■■■□□ 2.01
Col12a1Q60847 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC27.6■■■□□ 2.01
Col12a1Q60847 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Col12a1Q60847 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC27.59■■■□□ 2.01
Col12a1Q60847 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Col12a1Q60847 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC27.55■■■□□ 2
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms