Protein–RNA interactions for Protein: Q5NCP0

Rnf43, E3 ubiquitin-protein ligase RNF43, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf43Q5NCP0 Gm27322-201ENSMUST00000184007 104 ntBASIC28,79■■■□□ 2,2
Rnf43Q5NCP0 Gm24804-201ENSMUST00000174982 85 ntBASIC28,78■■■□□ 2,2
Rnf43Q5NCP0 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC28,75■■■□□ 2,19
Rnf43Q5NCP0 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC28,73■■■□□ 2,19
Rnf43Q5NCP0 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC28,69■■■□□ 2,18
Rnf43Q5NCP0 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC28,69■■■□□ 2,18
Rnf43Q5NCP0 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC28,66■■■□□ 2,18
Rnf43Q5NCP0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC28,64■■■□□ 2,18
Rnf43Q5NCP0 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC28,62■■■□□ 2,17
Rnf43Q5NCP0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC28,59■■■□□ 2,17
Rnf43Q5NCP0 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC28,58■■■□□ 2,17
Rnf43Q5NCP0 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC28,57■■■□□ 2,16
Rnf43Q5NCP0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28,56■■■□□ 2,16
Rnf43Q5NCP0 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC28,54■■■□□ 2,16
Rnf43Q5NCP0 Gm10524-201ENSMUST00000181931 1893 ntBASIC28,51■■■□□ 2,15
Rnf43Q5NCP0 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC28,48■■■□□ 2,15
Rnf43Q5NCP0 Gm42596-201ENSMUST00000196305 1958 ntBASIC28,44■■■□□ 2,14
Rnf43Q5NCP0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC28,42■■■□□ 2,14
Rnf43Q5NCP0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC28,41■■■□□ 2,14
Rnf43Q5NCP0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC28,34■■■□□ 2,13
Rnf43Q5NCP0 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC28,34■■■□□ 2,13
Rnf43Q5NCP0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28,3■■■□□ 2,12
Rnf43Q5NCP0 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC28,26■■■□□ 2,11
Rnf43Q5NCP0 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC28,25■■■□□ 2,11
Rnf43Q5NCP0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC28,25■■■□□ 2,11
Rnf43Q5NCP0 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC28,23■■■□□ 2,11
Rnf43Q5NCP0 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC28,23■■■□□ 2,11
Rnf43Q5NCP0 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC28,21■■■□□ 2,11
Rnf43Q5NCP0 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC28,2■■■□□ 2,11
Rnf43Q5NCP0 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC28,19■■■□□ 2,1
Rnf43Q5NCP0 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC28,18■■■□□ 2,1
Rnf43Q5NCP0 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC28,16■■■□□ 2,1
Rnf43Q5NCP0 Zfp131-205ENSMUST00000223812 663 ntBASIC28,15■■■□□ 2,1
Rnf43Q5NCP0 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC28,13■■■□□ 2,09
Rnf43Q5NCP0 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC28,11■■■□□ 2,09
Rnf43Q5NCP0 AC166822.3-201ENSMUST00000227394 661 ntBASIC28,1■■■□□ 2,09
Rnf43Q5NCP0 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC28,1■■■□□ 2,09
Rnf43Q5NCP0 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC28,09■■■□□ 2,09
Rnf43Q5NCP0 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC28,08■■■□□ 2,08
Rnf43Q5NCP0 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC28,07■■■□□ 2,08
Rnf43Q5NCP0 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC28,06■■■□□ 2,08
Rnf43Q5NCP0 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC28,06■■■□□ 2,08
Rnf43Q5NCP0 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC28,05■■■□□ 2,08
Rnf43Q5NCP0 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC28,04■■■□□ 2,08
Rnf43Q5NCP0 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC28■■■□□ 2,07
Rnf43Q5NCP0 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2,07
Rnf43Q5NCP0 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC27,97■■■□□ 2,07
Rnf43Q5NCP0 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC27,96■■■□□ 2,07
Rnf43Q5NCP0 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC27,95■■■□□ 2,07
Rnf43Q5NCP0 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC27,95■■■□□ 2,06
Rnf43Q5NCP0 AL845457.1-201ENSMUST00000197244 68 ntBASIC27,93■■■□□ 2,06
Rnf43Q5NCP0 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC27,92■■■□□ 2,06
Rnf43Q5NCP0 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC27,9■■■□□ 2,06
Rnf43Q5NCP0 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC27,87■■■□□ 2,05
Rnf43Q5NCP0 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC27,87■■■□□ 2,05
Rnf43Q5NCP0 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC27,82■■■□□ 2,04
Rnf43Q5NCP0 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC27,82■■■□□ 2,04
Rnf43Q5NCP0 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC27,76■■■□□ 2,04
Rnf43Q5NCP0 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC27,75■■■□□ 2,03
Rnf43Q5NCP0 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC27,73■■■□□ 2,03
Rnf43Q5NCP0 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC27,72■■■□□ 2,03
Rnf43Q5NCP0 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC27,7■■■□□ 2,03
Rnf43Q5NCP0 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC27,68■■■□□ 2,02
Rnf43Q5NCP0 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC27,67■■■□□ 2,02
Rnf43Q5NCP0 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC27,67■■■□□ 2,02
Rnf43Q5NCP0 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC27,66■■■□□ 2,02
Rnf43Q5NCP0 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC27,64■■■□□ 2,02
Rnf43Q5NCP0 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC27,62■■■□□ 2,01
Rnf43Q5NCP0 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC27,62■■■□□ 2,01
Rnf43Q5NCP0 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC27,6■■■□□ 2,01
Rnf43Q5NCP0 Gm16148-201ENSMUST00000119653 893 ntBASIC27,58■■■□□ 2,01
Rnf43Q5NCP0 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC27,57■■■□□ 2
Rnf43Q5NCP0 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC27,55■■■□□ 2
Rnf43Q5NCP0 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC27,53■■■□□ 2
Rnf43Q5NCP0 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC27,53■■■□□ 2
Rnf43Q5NCP0 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC27,53■■■□□ 2
Rnf43Q5NCP0 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC27,52■■■□□ 2
Rnf43Q5NCP0 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC27,52■■■□□ 2
Rnf43Q5NCP0 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC27,5■■□□□ 1,99
Rnf43Q5NCP0 Zfp131-207ENSMUST00000224946 1783 ntBASIC27,43■■□□□ 1,98
Rnf43Q5NCP0 Tdp2-203ENSMUST00000223804 1136 ntBASIC27,42■■□□□ 1,98
Rnf43Q5NCP0 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC27,41■■□□□ 1,98
Rnf43Q5NCP0 Peli2-204ENSMUST00000226513 1320 ntBASIC27,41■■□□□ 1,98
Rnf43Q5NCP0 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC27,4■■□□□ 1,98
Rnf43Q5NCP0 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC27,4■■□□□ 1,98
Rnf43Q5NCP0 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC27,38■■□□□ 1,97
Rnf43Q5NCP0 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC27,38■■□□□ 1,97
Rnf43Q5NCP0 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC27,37■■□□□ 1,97
Rnf43Q5NCP0 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC27,37■■□□□ 1,97
Rnf43Q5NCP0 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC27,37■■□□□ 1,97
Rnf43Q5NCP0 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC27,36■■□□□ 1,97
Rnf43Q5NCP0 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC27,36■■□□□ 1,97
Rnf43Q5NCP0 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC27,35■■□□□ 1,97
Rnf43Q5NCP0 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC27,34■■□□□ 1,97
Rnf43Q5NCP0 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC27,33■■□□□ 1,97
Rnf43Q5NCP0 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC27,33■■□□□ 1,97
Rnf43Q5NCP0 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC27,27■■□□□ 1,96
Rnf43Q5NCP0 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC27,27■■□□□ 1,96
Rnf43Q5NCP0 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC27,26■■□□□ 1,95
Rnf43Q5NCP0 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC27,25■■□□□ 1,95
Retrieved 100 of 76,532 protein–RNA pairs in 11,5 ms