Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC29.84■■■□□ 2.37
Sox1P53783 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC29.8■■■□□ 2.36
Sox1P53783 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC29.75■■■□□ 2.35
Sox1P53783 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC29.75■■■□□ 2.35
Sox1P53783 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
Sox1P53783 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC29.67■■■□□ 2.34
Sox1P53783 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
Sox1P53783 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC29.61■■■□□ 2.33
Sox1P53783 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
Sox1P53783 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
Sox1P53783 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
Sox1P53783 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC29.5■■■□□ 2.31
Sox1P53783 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Sox1P53783 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
Sox1P53783 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC29.45■■■□□ 2.31
Sox1P53783 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC29.42■■■□□ 2.3
Sox1P53783 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
Sox1P53783 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Sox1P53783 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
Sox1P53783 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC29.33■■■□□ 2.29
Sox1P53783 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC29.33■■■□□ 2.29
Sox1P53783 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC29.32■■■□□ 2.28
Sox1P53783 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC29.31■■■□□ 2.28
Sox1P53783 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC29.29■■■□□ 2.28
Sox1P53783 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
Sox1P53783 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
Sox1P53783 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC29.24■■■□□ 2.27
Sox1P53783 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Sox1P53783 Gm5987-201ENSMUST00000196433 1151 ntBASIC29.23■■■□□ 2.27
Sox1P53783 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
Sox1P53783 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC29.16■■■□□ 2.26
Sox1P53783 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC29.13■■■□□ 2.25
Sox1P53783 Tdp2-203ENSMUST00000223804 1136 ntBASIC29.13■■■□□ 2.25
Sox1P53783 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC29.13■■■□□ 2.25
Sox1P53783 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
Sox1P53783 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC29.04■■■□□ 2.24
Sox1P53783 AC166822.3-201ENSMUST00000227394 661 ntBASIC29.01■■■□□ 2.23
Sox1P53783 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC29■■■□□ 2.23
Sox1P53783 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC28.99■■■□□ 2.23
Sox1P53783 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
Sox1P53783 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
Sox1P53783 Gm16148-201ENSMUST00000119653 893 ntBASIC28.95■■■□□ 2.22
Sox1P53783 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.94■■■□□ 2.22
Sox1P53783 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC28.89■■■□□ 2.22
Sox1P53783 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.21
Sox1P53783 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC28.88■■■□□ 2.21
Sox1P53783 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC28.85■■■□□ 2.21
Sox1P53783 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Sox1P53783 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC28.84■■■□□ 2.21
Sox1P53783 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Sox1P53783 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC28.82■■■□□ 2.2
Sox1P53783 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC28.82■■■□□ 2.2
Sox1P53783 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
Sox1P53783 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC28.79■■■□□ 2.2
Sox1P53783 Gm45855-201ENSMUST00000212546 880 ntBASIC28.79■■■□□ 2.2
Sox1P53783 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC28.78■■■□□ 2.2
Sox1P53783 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
Sox1P53783 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
Sox1P53783 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC28.75■■■□□ 2.19
Sox1P53783 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Sox1P53783 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
Sox1P53783 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Sox1P53783 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC28.69■■■□□ 2.18
Sox1P53783 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Sox1P53783 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Sox1P53783 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
Sox1P53783 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC28.65■■■□□ 2.18
Sox1P53783 Psd-208ENSMUST00000224556 2034 ntBASIC28.62■■■□□ 2.17
Sox1P53783 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC28.62■■■□□ 2.17
Sox1P53783 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC28.61■■■□□ 2.17
Sox1P53783 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC28.6■■■□□ 2.17
Sox1P53783 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
Sox1P53783 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Sox1P53783 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
Sox1P53783 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Sox1P53783 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Sox1P53783 AL845457.1-201ENSMUST00000197244 68 ntBASIC28.51■■■□□ 2.15
Sox1P53783 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC28.48■■■□□ 2.15
Sox1P53783 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
Sox1P53783 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
Sox1P53783 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Sox1P53783 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Sox1P53783 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
Sox1P53783 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Sox1P53783 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC28.42■■■□□ 2.14
Sox1P53783 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC28.4■■■□□ 2.14
Sox1P53783 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
Sox1P53783 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Sox1P53783 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Sox1P53783 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC28.37■■■□□ 2.13
Sox1P53783 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Sox1P53783 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Sox1P53783 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC28.33■■■□□ 2.13
Sox1P53783 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Sox1P53783 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Sox1P53783 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
Sox1P53783 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC28.31■■■□□ 2.12
Sox1P53783 Peli2-204ENSMUST00000226513 1320 ntBASIC28.31■■■□□ 2.12
Sox1P53783 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC28.3■■■□□ 2.12
Sox1P53783 Gm9397-201ENSMUST00000200125 605 ntBASIC28.28■■■□□ 2.12
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms