Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm25239-201ENSMUST00000174915 86 ntBASIC42,37■■■■■ 4,37
Sox1P53783 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39,65■■■■□ 3,94
Sox1P53783 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38,9■■■■□ 3,82
Sox1P53783 Gm24109-201ENSMUST00000175489 103 ntBASIC37,25■■■■□ 3,55
Sox1P53783 Gm15042-201ENSMUST00000120212 883 ntBASIC36,08■■■■□ 3,37
Sox1P53783 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35,82■■■■□ 3,32
Sox1P53783 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35,81■■■■□ 3,32
Sox1P53783 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC35,75■■■■□ 3,31
Sox1P53783 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35,35■■■■□ 3,25
Sox1P53783 Gm23366-201ENSMUST00000175022 89 ntBASIC35,2■■■■□ 3,23
Sox1P53783 Gm15045-201ENSMUST00000117359 883 ntBASIC35,15■■■■□ 3,22
Sox1P53783 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35,07■■■■□ 3,2
Sox1P53783 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34,79■■■■□ 3,16
Sox1P53783 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC34,78■■■■□ 3,16
Sox1P53783 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC34,76■■■■□ 3,16
Sox1P53783 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC34,61■■■■□ 3,13
Sox1P53783 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33,92■■■■□ 3,02
Sox1P53783 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33,77■■■■□ 3
Sox1P53783 Gm25238-201ENSMUST00000174914 89 ntBASIC33,77■■■■□ 3
Sox1P53783 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33,76■■■□□ 2,99
Sox1P53783 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33,65■■■□□ 2,98
Sox1P53783 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33,48■■■□□ 2,95
Sox1P53783 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC33,01■■■□□ 2,87
Sox1P53783 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32,96■■■□□ 2,87
Sox1P53783 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32,84■■■□□ 2,85
Sox1P53783 Gm25262-201ENSMUST00000174934 133 ntBASIC32,76■■■□□ 2,83
Sox1P53783 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32,63■■■□□ 2,81
Sox1P53783 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32,43■■■□□ 2,78
Sox1P53783 Gm26115-201ENSMUST00000175605 87 ntBASIC32,34■■■□□ 2,77
Sox1P53783 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC32,32■■■□□ 2,76
Sox1P53783 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32,32■■■□□ 2,76
Sox1P53783 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32,25■■■□□ 2,75
Sox1P53783 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32,22■■■□□ 2,75
Sox1P53783 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32,11■■■□□ 2,73
Sox1P53783 Gm8109-201ENSMUST00000194076 746 ntBASIC32,1■■■□□ 2,73
Sox1P53783 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32,03■■■□□ 2,72
Sox1P53783 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31,95■■■□□ 2,71
Sox1P53783 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC31,83■■■□□ 2,69
Sox1P53783 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31,8■■■□□ 2,68
Sox1P53783 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC31,8■■■□□ 2,68
Sox1P53783 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31,77■■■□□ 2,68
Sox1P53783 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC31,69■■■□□ 2,66
Sox1P53783 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC31,52■■■□□ 2,64
Sox1P53783 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31,51■■■□□ 2,63
Sox1P53783 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31,48■■■□□ 2,63
Sox1P53783 Rab21-202ENSMUST00000218831 843 ntBASIC31,47■■■□□ 2,63
Sox1P53783 Gm27325-201ENSMUST00000175467 74 ntBASIC31,43■■■□□ 2,62
Sox1P53783 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31,37■■■□□ 2,61
Sox1P53783 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC31,36■■■□□ 2,61
Sox1P53783 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31,35■■■□□ 2,61
Sox1P53783 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31,33■■■□□ 2,61
Sox1P53783 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC31,24■■■□□ 2,59
Sox1P53783 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31,23■■■□□ 2,59
Sox1P53783 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31,18■■■□□ 2,58
Sox1P53783 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC31,1■■■□□ 2,57
Sox1P53783 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC31,05■■■□□ 2,56
Sox1P53783 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31,04■■■□□ 2,56
Sox1P53783 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC30,98■■■□□ 2,55
Sox1P53783 Gm24804-201ENSMUST00000174982 85 ntBASIC30,93■■■□□ 2,54
Sox1P53783 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC30,87■■■□□ 2,53
Sox1P53783 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30,86■■■□□ 2,53
Sox1P53783 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30,85■■■□□ 2,53
Sox1P53783 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30,83■■■□□ 2,53
Sox1P53783 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC30,79■■■□□ 2,52
Sox1P53783 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30,74■■■□□ 2,51
Sox1P53783 Gm17082-201ENSMUST00000166043 1091 ntBASIC30,64■■■□□ 2,5
Sox1P53783 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30,63■■■□□ 2,49
Sox1P53783 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30,63■■■□□ 2,49
Sox1P53783 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC30,54■■■□□ 2,48
Sox1P53783 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30,5■■■□□ 2,47
Sox1P53783 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC30,49■■■□□ 2,47
Sox1P53783 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30,47■■■□□ 2,47
Sox1P53783 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC30,45■■■□□ 2,47
Sox1P53783 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC30,43■■■□□ 2,46
Sox1P53783 Zfp131-205ENSMUST00000223812 663 ntBASIC30,43■■■□□ 2,46
Sox1P53783 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30,41■■■□□ 2,46
Sox1P53783 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30,39■■■□□ 2,46
Sox1P53783 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30,35■■■□□ 2,45
Sox1P53783 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC30,31■■■□□ 2,44
Sox1P53783 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC30,28■■■□□ 2,44
Sox1P53783 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC30,28■■■□□ 2,44
Sox1P53783 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC30,26■■■□□ 2,43
Sox1P53783 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC30,23■■■□□ 2,43
Sox1P53783 Gm27322-201ENSMUST00000184007 104 ntBASIC30,2■■■□□ 2,43
Sox1P53783 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC30,18■■■□□ 2,42
Sox1P53783 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC30,17■■■□□ 2,42
Sox1P53783 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30,14■■■□□ 2,42
Sox1P53783 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC30,08■■■□□ 2,41
Sox1P53783 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC30■■■□□ 2,39
Sox1P53783 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC29,97■■■□□ 2,39
Sox1P53783 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC29,96■■■□□ 2,39
Sox1P53783 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC29,95■■■□□ 2,39
Sox1P53783 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC29,95■■■□□ 2,39
Sox1P53783 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC29,94■■■□□ 2,38
Sox1P53783 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC29,93■■■□□ 2,38
Sox1P53783 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC29,9■■■□□ 2,38
Sox1P53783 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC29,9■■■□□ 2,38
Sox1P53783 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC29,87■■■□□ 2,37
Sox1P53783 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC29,85■■■□□ 2,37
Sox1P53783 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC29,85■■■□□ 2,37
Retrieved 100 of 76,532 protein–RNA pairs in 10,9 ms