Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC35,8■■■■□ 3,32
Col4a1P02463 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC35,77■■■■□ 3,32
Col4a1P02463 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC35,77■■■■□ 3,32
Col4a1P02463 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC35,77■■■■□ 3,32
Col4a1P02463 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC35,76■■■■□ 3,31
Col4a1P02463 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC35,71■■■■□ 3,31
Col4a1P02463 CT025624.2-201ENSMUST00000223609 1909 ntBASIC35,66■■■■□ 3,3
Col4a1P02463 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC35,56■■■■□ 3,28
Col4a1P02463 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC35,53■■■■□ 3,28
Col4a1P02463 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC35,49■■■■□ 3,27
Col4a1P02463 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC35,48■■■■□ 3,27
Col4a1P02463 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC35,42■■■■□ 3,26
Col4a1P02463 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC35,42■■■■□ 3,26
Col4a1P02463 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC35,37■■■■□ 3,25
Col4a1P02463 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC35,36■■■■□ 3,25
Col4a1P02463 Gm24804-201ENSMUST00000174982 85 ntBASIC35,33■■■■□ 3,25
Col4a1P02463 Gm27322-201ENSMUST00000184007 104 ntBASIC35,27■■■■□ 3,24
Col4a1P02463 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC35,27■■■■□ 3,24
Col4a1P02463 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC35,25■■■■□ 3,23
Col4a1P02463 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC35,23■■■■□ 3,23
Col4a1P02463 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC35,21■■■■□ 3,23
Col4a1P02463 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC35,21■■■■□ 3,23
Col4a1P02463 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC35,19■■■■□ 3,22
Col4a1P02463 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC35,17■■■■□ 3,22
Col4a1P02463 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC35,13■■■■□ 3,21
Col4a1P02463 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC35,12■■■■□ 3,21
Col4a1P02463 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC35,09■■■■□ 3,21
Col4a1P02463 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC35,08■■■■□ 3,21
Col4a1P02463 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC34,98■■■■□ 3,19
Col4a1P02463 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC34,96■■■■□ 3,19
Col4a1P02463 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC34,93■■■■□ 3,18
Col4a1P02463 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC34,88■■■■□ 3,17
Col4a1P02463 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC34,87■■■■□ 3,17
Col4a1P02463 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC34,86■■■■□ 3,17
Col4a1P02463 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC34,86■■■■□ 3,17
Col4a1P02463 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC34,85■■■■□ 3,17
Col4a1P02463 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC34,83■■■■□ 3,17
Col4a1P02463 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC34,81■■■■□ 3,16
Col4a1P02463 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC34,8■■■■□ 3,16
Col4a1P02463 AL845457.1-201ENSMUST00000197244 68 ntBASIC34,77■■■■□ 3,16
Col4a1P02463 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC34,77■■■■□ 3,16
Col4a1P02463 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC34,76■■■■□ 3,16
Col4a1P02463 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC34,72■■■■□ 3,15
Col4a1P02463 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC34,71■■■■□ 3,15
Col4a1P02463 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC34,68■■■■□ 3,14
Col4a1P02463 AC166822.3-201ENSMUST00000227394 661 ntBASIC34,68■■■■□ 3,14
Col4a1P02463 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC34,66■■■■□ 3,14
Col4a1P02463 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC34,63■■■■□ 3,13
Col4a1P02463 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC34,62■■■■□ 3,13
Col4a1P02463 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC34,6■■■■□ 3,13
Col4a1P02463 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC34,59■■■■□ 3,13
Col4a1P02463 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC34,59■■■■□ 3,13
Col4a1P02463 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC34,55■■■■□ 3,12
Col4a1P02463 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC34,52■■■■□ 3,12
Col4a1P02463 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC34,51■■■■□ 3,12
Col4a1P02463 Zfp131-207ENSMUST00000224946 1783 ntBASIC34,5■■■■□ 3,11
Col4a1P02463 Zfp131-205ENSMUST00000223812 663 ntBASIC34,49■■■■□ 3,11
Col4a1P02463 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC34,45■■■■□ 3,11
Col4a1P02463 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC34,45■■■■□ 3,11
Col4a1P02463 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC34,44■■■■□ 3,1
Col4a1P02463 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC34,43■■■■□ 3,1
Col4a1P02463 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC34,39■■■■□ 3,1
Col4a1P02463 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC34,38■■■■□ 3,09
Col4a1P02463 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC34,37■■■■□ 3,09
Col4a1P02463 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC34,35■■■■□ 3,09
Col4a1P02463 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC34,32■■■■□ 3,08
Col4a1P02463 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC34,31■■■■□ 3,08
Col4a1P02463 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC34,3■■■■□ 3,08
Col4a1P02463 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC34,24■■■■□ 3,07
Col4a1P02463 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC34,24■■■■□ 3,07
Col4a1P02463 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC34,24■■■■□ 3,07
Col4a1P02463 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC34,18■■■■□ 3,06
Col4a1P02463 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC34,16■■■■□ 3,06
Col4a1P02463 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC34,13■■■■□ 3,05
Col4a1P02463 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC34,1■■■■□ 3,05
Col4a1P02463 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC34,06■■■■□ 3,04
Col4a1P02463 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC34,05■■■■□ 3,04
Col4a1P02463 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC34,01■■■■□ 3,03
Col4a1P02463 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC33,98■■■■□ 3,03
Col4a1P02463 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC33,97■■■■□ 3,03
Col4a1P02463 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC33,92■■■■□ 3,02
Col4a1P02463 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC33,91■■■■□ 3,02
Col4a1P02463 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC33,91■■■■□ 3,02
Col4a1P02463 Peli2-204ENSMUST00000226513 1320 ntBASIC33,91■■■■□ 3,02
Col4a1P02463 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC33,9■■■■□ 3,02
Col4a1P02463 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC33,88■■■■□ 3,01
Col4a1P02463 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC33,87■■■■□ 3,01
Col4a1P02463 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC33,87■■■■□ 3,01
Col4a1P02463 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC33,87■■■■□ 3,01
Col4a1P02463 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC33,85■■■■□ 3,01
Col4a1P02463 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC33,84■■■■□ 3,01
Col4a1P02463 Mipep-204ENSMUST00000225043 1548 ntBASIC33,81■■■■□ 3
Col4a1P02463 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC33,8■■■■□ 3
Col4a1P02463 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC33,79■■■■□ 3
Col4a1P02463 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC33,78■■■■□ 3
Col4a1P02463 Gm16148-201ENSMUST00000119653 893 ntBASIC33,77■■■■□ 3
Col4a1P02463 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC33,77■■■■□ 3
Col4a1P02463 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC33,76■■■□□ 2,99
Col4a1P02463 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC33,76■■■□□ 2,99
Col4a1P02463 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC33,75■■■□□ 2,99
Retrieved 100 of 76,532 protein–RNA pairs in 11,3 ms