Protein–RNA interactions for Protein: O88935

Syn1, Synapsin-1, mousemouse

Predictions only

Length 706 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syn1O88935 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
Syn1O88935 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC29.51■■■□□ 2.31
Syn1O88935 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC29.5■■■□□ 2.31
Syn1O88935 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Syn1O88935 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
Syn1O88935 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
Syn1O88935 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC29.43■■■□□ 2.3
Syn1O88935 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC29.42■■■□□ 2.3
Syn1O88935 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
Syn1O88935 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC29.38■■■□□ 2.29
Syn1O88935 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC29.36■■■□□ 2.29
Syn1O88935 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
Syn1O88935 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Syn1O88935 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC29.31■■■□□ 2.28
Syn1O88935 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Syn1O88935 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
Syn1O88935 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
Syn1O88935 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC29.09■■■□□ 2.25
Syn1O88935 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Syn1O88935 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Syn1O88935 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Syn1O88935 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC29.02■■■□□ 2.24
Syn1O88935 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
Syn1O88935 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC29.01■■■□□ 2.23
Syn1O88935 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Syn1O88935 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC28.98■■■□□ 2.23
Syn1O88935 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
Syn1O88935 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
Syn1O88935 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.21
Syn1O88935 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
Syn1O88935 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Syn1O88935 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC28.83■■■□□ 2.21
Syn1O88935 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Syn1O88935 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC28.81■■■□□ 2.2
Syn1O88935 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC28.74■■■□□ 2.19
Syn1O88935 AC166822.3-201ENSMUST00000227394 661 ntBASIC28.74■■■□□ 2.19
Syn1O88935 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Syn1O88935 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Syn1O88935 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC28.7■■■□□ 2.18
Syn1O88935 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.69■■■□□ 2.18
Syn1O88935 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Syn1O88935 Tdp2-203ENSMUST00000223804 1136 ntBASIC28.66■■■□□ 2.18
Syn1O88935 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Syn1O88935 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Syn1O88935 Gm16148-201ENSMUST00000119653 893 ntBASIC28.63■■■□□ 2.17
Syn1O88935 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
Syn1O88935 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Syn1O88935 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC28.6■■■□□ 2.17
Syn1O88935 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Syn1O88935 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
Syn1O88935 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
Syn1O88935 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC28.55■■■□□ 2.16
Syn1O88935 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Syn1O88935 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.52■■■□□ 2.16
Syn1O88935 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC28.51■■■□□ 2.15
Syn1O88935 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Syn1O88935 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC28.47■■■□□ 2.15
Syn1O88935 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC28.47■■■□□ 2.15
Syn1O88935 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
Syn1O88935 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC28.44■■■□□ 2.14
Syn1O88935 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC28.44■■■□□ 2.14
Syn1O88935 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC28.44■■■□□ 2.14
Syn1O88935 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC28.42■■■□□ 2.14
Syn1O88935 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Syn1O88935 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Syn1O88935 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Syn1O88935 Gm5987-201ENSMUST00000196433 1151 ntBASIC28.39■■■□□ 2.14
Syn1O88935 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Syn1O88935 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC28.37■■■□□ 2.13
Syn1O88935 AL845457.1-201ENSMUST00000197244 68 ntBASIC28.36■■■□□ 2.13
Syn1O88935 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
Syn1O88935 Gm45855-201ENSMUST00000212546 880 ntBASIC28.32■■■□□ 2.12
Syn1O88935 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC28.3■■■□□ 2.12
Syn1O88935 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Syn1O88935 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
Syn1O88935 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.12
Syn1O88935 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
Syn1O88935 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
Syn1O88935 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC28.22■■■□□ 2.11
Syn1O88935 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC28.22■■■□□ 2.11
Syn1O88935 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
Syn1O88935 CT025624.2-201ENSMUST00000223609 1909 ntBASIC28.2■■■□□ 2.1
Syn1O88935 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
Syn1O88935 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Syn1O88935 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC28.16■■■□□ 2.1
Syn1O88935 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Syn1O88935 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.09
Syn1O88935 Gm42596-201ENSMUST00000196305 1958 ntBASIC28.13■■■□□ 2.09
Syn1O88935 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Syn1O88935 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
Syn1O88935 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC28.11■■■□□ 2.09
Syn1O88935 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Syn1O88935 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Syn1O88935 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Syn1O88935 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC28.07■■■□□ 2.08
Syn1O88935 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Syn1O88935 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Syn1O88935 Peli2-204ENSMUST00000226513 1320 ntBASIC28.03■■■□□ 2.08
Syn1O88935 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC28.03■■■□□ 2.08
Syn1O88935 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Retrieved 100 of 76,532 protein–RNA pairs in 11.6 ms