Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC23,79■■□□□ 1,4
Cldn1O88551 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC23,79■■□□□ 1,4
Cldn1O88551 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC23,78■■□□□ 1,4
Cldn1O88551 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC23,75■■□□□ 1,39
Cldn1O88551 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC23,72■■□□□ 1,39
Cldn1O88551 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC23,72■■□□□ 1,39
Cldn1O88551 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC23,69■■□□□ 1,38
Cldn1O88551 Zfp131-205ENSMUST00000223812 663 ntBASIC23,68■■□□□ 1,38
Cldn1O88551 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC23,65■■□□□ 1,38
Cldn1O88551 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC23,58■■□□□ 1,37
Cldn1O88551 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC23,57■■□□□ 1,36
Cldn1O88551 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC23,56■■□□□ 1,36
Cldn1O88551 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC23,55■■□□□ 1,36
Cldn1O88551 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC23,55■■□□□ 1,36
Cldn1O88551 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC23,55■■□□□ 1,36
Cldn1O88551 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC23,54■■□□□ 1,36
Cldn1O88551 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC23,5■■□□□ 1,35
Cldn1O88551 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC23,5■■□□□ 1,35
Cldn1O88551 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC23,48■■□□□ 1,35
Cldn1O88551 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC23,47■■□□□ 1,35
Cldn1O88551 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC23,45■■□□□ 1,34
Cldn1O88551 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC23,45■■□□□ 1,34
Cldn1O88551 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC23,45■■□□□ 1,34
Cldn1O88551 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC23,44■■□□□ 1,34
Cldn1O88551 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC23,42■■□□□ 1,34
Cldn1O88551 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC23,42■■□□□ 1,34
Cldn1O88551 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC23,41■■□□□ 1,34
Cldn1O88551 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC23,39■■□□□ 1,33
Cldn1O88551 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC23,38■■□□□ 1,33
Cldn1O88551 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC23,37■■□□□ 1,33
Cldn1O88551 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC23,36■■□□□ 1,33
Cldn1O88551 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC23,36■■□□□ 1,33
Cldn1O88551 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC23,29■■□□□ 1,32
Cldn1O88551 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23,25■■□□□ 1,31
Cldn1O88551 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC23,22■■□□□ 1,31
Cldn1O88551 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC23,21■■□□□ 1,31
Cldn1O88551 AC166822.3-201ENSMUST00000227394 661 ntBASIC23,21■■□□□ 1,31
Cldn1O88551 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC23,2■■□□□ 1,3
Cldn1O88551 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC23,19■■□□□ 1,3
Cldn1O88551 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC23,19■■□□□ 1,3
Cldn1O88551 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC23,18■■□□□ 1,3
Cldn1O88551 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC23,16■■□□□ 1,3
Cldn1O88551 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC23,16■■□□□ 1,3
Cldn1O88551 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23,15■■□□□ 1,3
Cldn1O88551 Gm42596-201ENSMUST00000196305 1958 ntBASIC23,15■■□□□ 1,3
Cldn1O88551 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC23,13■■□□□ 1,29
Cldn1O88551 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC23,11■■□□□ 1,29
Cldn1O88551 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC23,11■■□□□ 1,29
Cldn1O88551 CT025624.2-201ENSMUST00000223609 1909 ntBASIC23,1■■□□□ 1,29
Cldn1O88551 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC23,08■■□□□ 1,28
Cldn1O88551 Gm10524-201ENSMUST00000181931 1893 ntBASIC23,07■■□□□ 1,28
Cldn1O88551 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC23,04■■□□□ 1,28
Cldn1O88551 AL845457.1-201ENSMUST00000197244 68 ntBASIC23,02■■□□□ 1,28
Cldn1O88551 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC23,02■■□□□ 1,28
Cldn1O88551 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC23■■□□□ 1,27
Cldn1O88551 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22,98■■□□□ 1,27
Cldn1O88551 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC22,97■■□□□ 1,27
Cldn1O88551 Gm16148-201ENSMUST00000119653 893 ntBASIC22,96■■□□□ 1,27
Cldn1O88551 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC22,93■■□□□ 1,26
Cldn1O88551 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC22,93■■□□□ 1,26
Cldn1O88551 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC22,93■■□□□ 1,26
Cldn1O88551 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC22,93■■□□□ 1,26
Cldn1O88551 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC22,92■■□□□ 1,26
Cldn1O88551 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC22,91■■□□□ 1,26
Cldn1O88551 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC22,9■■□□□ 1,26
Cldn1O88551 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC22,9■■□□□ 1,26
Cldn1O88551 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22,89■■□□□ 1,26
Cldn1O88551 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC22,89■■□□□ 1,25
Cldn1O88551 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC22,89■■□□□ 1,25
Cldn1O88551 Tdp2-203ENSMUST00000223804 1136 ntBASIC22,88■■□□□ 1,25
Cldn1O88551 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC22,87■■□□□ 1,25
Cldn1O88551 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC22,87■■□□□ 1,25
Cldn1O88551 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC22,87■■□□□ 1,25
Cldn1O88551 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22,84■■□□□ 1,25
Cldn1O88551 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC22,83■■□□□ 1,25
Cldn1O88551 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC22,81■■□□□ 1,24
Cldn1O88551 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC22,79■■□□□ 1,24
Cldn1O88551 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC22,78■■□□□ 1,24
Cldn1O88551 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC22,78■■□□□ 1,24
Cldn1O88551 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC22,78■■□□□ 1,24
Cldn1O88551 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC22,76■■□□□ 1,23
Cldn1O88551 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC22,76■■□□□ 1,23
Cldn1O88551 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC22,75■■□□□ 1,23
Cldn1O88551 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC22,75■■□□□ 1,23
Cldn1O88551 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC22,74■■□□□ 1,23
Cldn1O88551 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC22,74■■□□□ 1,23
Cldn1O88551 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC22,72■■□□□ 1,23
Cldn1O88551 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC22,71■■□□□ 1,23
Cldn1O88551 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC22,7■■□□□ 1,22
Cldn1O88551 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC22,7■■□□□ 1,22
Cldn1O88551 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC22,69■■□□□ 1,22
Cldn1O88551 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC22,68■■□□□ 1,22
Cldn1O88551 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC22,67■■□□□ 1,22
Cldn1O88551 Peli2-204ENSMUST00000226513 1320 ntBASIC22,66■■□□□ 1,22
Cldn1O88551 Gm45855-201ENSMUST00000212546 880 ntBASIC22,65■■□□□ 1,22
Cldn1O88551 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC22,64■■□□□ 1,21
Cldn1O88551 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC22,62■■□□□ 1,21
Cldn1O88551 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC22,62■■□□□ 1,21
Cldn1O88551 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC22,61■■□□□ 1,21
Cldn1O88551 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC22,59■■□□□ 1,21
Retrieved 100 of 76,532 protein–RNA pairs in 14,3 ms