Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Gm25239-201ENSMUST00000174915 86 ntBASIC33.49■■■□□ 2.95
Cldn1O88551 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Cldn1O88551 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Cldn1O88551 Gm24109-201ENSMUST00000175489 103 ntBASIC29.26■■■□□ 2.27
Cldn1O88551 Gm15042-201ENSMUST00000120212 883 ntBASIC28.83■■■□□ 2.21
Cldn1O88551 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
Cldn1O88551 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
Cldn1O88551 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Cldn1O88551 Gm15045-201ENSMUST00000117359 883 ntBASIC28.13■■■□□ 2.09
Cldn1O88551 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Cldn1O88551 Gm23366-201ENSMUST00000175022 89 ntBASIC27.88■■■□□ 2.05
Cldn1O88551 AC153911.1-202ENSMUST00000218534 1034 ntBASIC27.45■■□□□ 1.98
Cldn1O88551 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC27.17■■□□□ 1.94
Cldn1O88551 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC27.16■■□□□ 1.94
Cldn1O88551 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Cldn1O88551 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Cldn1O88551 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Cldn1O88551 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Cldn1O88551 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Cldn1O88551 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC26.69■■□□□ 1.86
Cldn1O88551 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC26.59■■□□□ 1.85
Cldn1O88551 Gm25238-201ENSMUST00000174914 89 ntBASIC26.59■■□□□ 1.85
Cldn1O88551 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Cldn1O88551 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Cldn1O88551 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
Cldn1O88551 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC25.99■■□□□ 1.75
Cldn1O88551 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Cldn1O88551 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Cldn1O88551 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
Cldn1O88551 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
Cldn1O88551 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Cldn1O88551 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC25.69■■□□□ 1.7
Cldn1O88551 Gm25262-201ENSMUST00000174934 133 ntBASIC25.66■■□□□ 1.7
Cldn1O88551 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC25.62■■□□□ 1.69
Cldn1O88551 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC25.61■■□□□ 1.69
Cldn1O88551 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.68
Cldn1O88551 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
Cldn1O88551 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Cldn1O88551 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Cldn1O88551 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC25.35■■□□□ 1.65
Cldn1O88551 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC25.27■■□□□ 1.64
Cldn1O88551 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC25.26■■□□□ 1.63
Cldn1O88551 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC25.25■■□□□ 1.63
Cldn1O88551 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
Cldn1O88551 Gm26115-201ENSMUST00000175605 87 ntBASIC25.2■■□□□ 1.62
Cldn1O88551 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC25.2■■□□□ 1.62
Cldn1O88551 Gm27325-201ENSMUST00000175467 74 ntBASIC25.18■■□□□ 1.62
Cldn1O88551 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Cldn1O88551 Gm8109-201ENSMUST00000194076 746 ntBASIC25.04■■□□□ 1.6
Cldn1O88551 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC25■■□□□ 1.59
Cldn1O88551 Rab21-202ENSMUST00000218831 843 ntBASIC25■■□□□ 1.59
Cldn1O88551 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC24.99■■□□□ 1.59
Cldn1O88551 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Cldn1O88551 Psd-208ENSMUST00000224556 2034 ntBASIC24.93■■□□□ 1.58
Cldn1O88551 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Cldn1O88551 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Cldn1O88551 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Cldn1O88551 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Cldn1O88551 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Cldn1O88551 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
Cldn1O88551 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC24.72■■□□□ 1.55
Cldn1O88551 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
Cldn1O88551 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Cldn1O88551 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
Cldn1O88551 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC24.61■■□□□ 1.53
Cldn1O88551 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC24.56■■□□□ 1.52
Cldn1O88551 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC24.53■■□□□ 1.52
Cldn1O88551 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Cldn1O88551 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC24.42■■□□□ 1.5
Cldn1O88551 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
Cldn1O88551 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Cldn1O88551 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Cldn1O88551 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Cldn1O88551 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Cldn1O88551 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24.28■■□□□ 1.48
Cldn1O88551 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Cldn1O88551 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Cldn1O88551 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Cldn1O88551 Gm17082-201ENSMUST00000166043 1091 ntBASIC24.22■■□□□ 1.47
Cldn1O88551 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Cldn1O88551 Gm24804-201ENSMUST00000174982 85 ntBASIC24.16■■□□□ 1.46
Cldn1O88551 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC24.12■■□□□ 1.45
Cldn1O88551 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Cldn1O88551 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC24.09■■□□□ 1.45
Cldn1O88551 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Cldn1O88551 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC24.02■■□□□ 1.44
Cldn1O88551 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
Cldn1O88551 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Cldn1O88551 Gm27322-201ENSMUST00000184007 104 ntBASIC23.96■■□□□ 1.43
Cldn1O88551 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC23.96■■□□□ 1.43
Cldn1O88551 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC23.95■■□□□ 1.42
Cldn1O88551 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC23.92■■□□□ 1.42
Cldn1O88551 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Cldn1O88551 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
Cldn1O88551 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC23.89■■□□□ 1.41
Cldn1O88551 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC23.87■■□□□ 1.41
Cldn1O88551 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
Cldn1O88551 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Cldn1O88551 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
Cldn1O88551 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC23.82■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 14.6 ms