Protein–RNA interactions for Protein: O88427

Cacna1h, Voltage-dependent T-type calcium channel subunit alpha-1H, mousemouse

Predictions only

Length 2,365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1hO88427 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC28.76■■■□□ 2.2
Cacna1hO88427 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
Cacna1hO88427 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC28.72■■■□□ 2.19
Cacna1hO88427 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC28.71■■■□□ 2.19
Cacna1hO88427 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
Cacna1hO88427 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Cacna1hO88427 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC28.62■■■□□ 2.17
Cacna1hO88427 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC28.57■■■□□ 2.16
Cacna1hO88427 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Cacna1hO88427 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.52■■■□□ 2.16
Cacna1hO88427 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC28.41■■■□□ 2.14
Cacna1hO88427 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC28.4■■■□□ 2.14
Cacna1hO88427 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.38■■■□□ 2.13
Cacna1hO88427 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Cacna1hO88427 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Cacna1hO88427 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
Cacna1hO88427 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC28.32■■■□□ 2.12
Cacna1hO88427 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Cacna1hO88427 Tdp2-203ENSMUST00000223804 1136 ntBASIC28.31■■■□□ 2.12
Cacna1hO88427 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Cacna1hO88427 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC28.29■■■□□ 2.12
Cacna1hO88427 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Cacna1hO88427 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
Cacna1hO88427 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC28.28■■■□□ 2.12
Cacna1hO88427 Gm5987-201ENSMUST00000196433 1151 ntBASIC28.26■■■□□ 2.11
Cacna1hO88427 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Cacna1hO88427 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Cacna1hO88427 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Cacna1hO88427 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Cacna1hO88427 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Cacna1hO88427 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC28.17■■■□□ 2.1
Cacna1hO88427 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
Cacna1hO88427 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
Cacna1hO88427 AC166822.3-201ENSMUST00000227394 661 ntBASIC28.11■■■□□ 2.09
Cacna1hO88427 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
Cacna1hO88427 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC28.06■■■□□ 2.08
Cacna1hO88427 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC28.02■■■□□ 2.08
Cacna1hO88427 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC28.02■■■□□ 2.08
Cacna1hO88427 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC28■■■□□ 2.07
Cacna1hO88427 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC27.98■■■□□ 2.07
Cacna1hO88427 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC27.94■■■□□ 2.06
Cacna1hO88427 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC27.94■■■□□ 2.06
Cacna1hO88427 Gm16148-201ENSMUST00000119653 893 ntBASIC27.94■■■□□ 2.06
Cacna1hO88427 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC27.93■■■□□ 2.06
Cacna1hO88427 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC27.9■■■□□ 2.06
Cacna1hO88427 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
Cacna1hO88427 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC27.89■■■□□ 2.06
Cacna1hO88427 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
Cacna1hO88427 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Cacna1hO88427 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Cacna1hO88427 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC27.8■■■□□ 2.04
Cacna1hO88427 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC27.79■■■□□ 2.04
Cacna1hO88427 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC27.78■■■□□ 2.04
Cacna1hO88427 Gm45855-201ENSMUST00000212546 880 ntBASIC27.78■■■□□ 2.04
Cacna1hO88427 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Cacna1hO88427 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Cacna1hO88427 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
Cacna1hO88427 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC27.75■■■□□ 2.03
Cacna1hO88427 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
Cacna1hO88427 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC27.72■■■□□ 2.03
Cacna1hO88427 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC27.69■■■□□ 2.02
Cacna1hO88427 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
Cacna1hO88427 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Cacna1hO88427 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
Cacna1hO88427 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
Cacna1hO88427 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Cacna1hO88427 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Cacna1hO88427 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC27.6■■■□□ 2.01
Cacna1hO88427 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC27.59■■■□□ 2.01
Cacna1hO88427 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC27.58■■■□□ 2
Cacna1hO88427 Psd-208ENSMUST00000224556 2034 ntBASIC27.57■■■□□ 2
Cacna1hO88427 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC27.57■■■□□ 2
Cacna1hO88427 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC27.56■■■□□ 2
Cacna1hO88427 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC27.55■■■□□ 2
Cacna1hO88427 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC27.52■■■□□ 2
Cacna1hO88427 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC27.49■■□□□ 1.99
Cacna1hO88427 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
Cacna1hO88427 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Cacna1hO88427 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Cacna1hO88427 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Cacna1hO88427 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC27.43■■□□□ 1.98
Cacna1hO88427 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Cacna1hO88427 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Cacna1hO88427 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Cacna1hO88427 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
Cacna1hO88427 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Cacna1hO88427 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
Cacna1hO88427 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC27.37■■□□□ 1.97
Cacna1hO88427 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC27.36■■□□□ 1.97
Cacna1hO88427 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Cacna1hO88427 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
Cacna1hO88427 Peli2-204ENSMUST00000226513 1320 ntBASIC27.33■■□□□ 1.97
Cacna1hO88427 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Cacna1hO88427 AL845457.1-201ENSMUST00000197244 68 ntBASIC27.31■■□□□ 1.96
Cacna1hO88427 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
Cacna1hO88427 Gm9397-201ENSMUST00000200125 605 ntBASIC27.29■■□□□ 1.96
Cacna1hO88427 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC27.28■■□□□ 1.96
Cacna1hO88427 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC27.27■■□□□ 1.96
Cacna1hO88427 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC27.27■■□□□ 1.96
Cacna1hO88427 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Retrieved 100 of 76,532 protein–RNA pairs in 11.9 ms