Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Gm42596-201ENSMUST00000196305 1958 ntBASIC31.67■■■□□ 2.66
Prom1O54990 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Prom1O54990 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Prom1O54990 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31.59■■■□□ 2.65
Prom1O54990 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Prom1O54990 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC31.52■■■□□ 2.64
Prom1O54990 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Prom1O54990 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Prom1O54990 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC31.44■■■□□ 2.62
Prom1O54990 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Prom1O54990 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31.38■■■□□ 2.61
Prom1O54990 Gm27322-201ENSMUST00000184007 104 ntBASIC31.37■■■□□ 2.61
Prom1O54990 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Prom1O54990 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.61
Prom1O54990 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Prom1O54990 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
Prom1O54990 Gm24804-201ENSMUST00000174982 85 ntBASIC31.25■■■□□ 2.59
Prom1O54990 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Prom1O54990 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC31.13■■■□□ 2.57
Prom1O54990 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Prom1O54990 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
Prom1O54990 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC31.08■■■□□ 2.57
Prom1O54990 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Prom1O54990 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Prom1O54990 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Prom1O54990 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Prom1O54990 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Prom1O54990 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Prom1O54990 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC30.91■■■□□ 2.54
Prom1O54990 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Prom1O54990 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC30.89■■■□□ 2.54
Prom1O54990 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Prom1O54990 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Prom1O54990 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
Prom1O54990 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
Prom1O54990 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
Prom1O54990 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC30.76■■■□□ 2.52
Prom1O54990 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC30.74■■■□□ 2.51
Prom1O54990 AL845457.1-201ENSMUST00000197244 68 ntBASIC30.71■■■□□ 2.51
Prom1O54990 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Prom1O54990 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Prom1O54990 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Prom1O54990 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Prom1O54990 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC30.7■■■□□ 2.51
Prom1O54990 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.51
Prom1O54990 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Prom1O54990 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Prom1O54990 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Prom1O54990 AC166822.3-201ENSMUST00000227394 661 ntBASIC30.65■■■□□ 2.5
Prom1O54990 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Prom1O54990 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Prom1O54990 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Prom1O54990 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Prom1O54990 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Prom1O54990 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
Prom1O54990 Zfp131-205ENSMUST00000223812 663 ntBASIC30.47■■■□□ 2.47
Prom1O54990 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
Prom1O54990 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Prom1O54990 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.43■■■□□ 2.46
Prom1O54990 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Prom1O54990 Zfp131-207ENSMUST00000224946 1783 ntBASIC30.38■■■□□ 2.45
Prom1O54990 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC30.37■■■□□ 2.45
Prom1O54990 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Prom1O54990 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC30.35■■■□□ 2.45
Prom1O54990 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC30.34■■■□□ 2.45
Prom1O54990 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Prom1O54990 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
Prom1O54990 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Prom1O54990 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Prom1O54990 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Prom1O54990 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Prom1O54990 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
Prom1O54990 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC30.18■■■□□ 2.42
Prom1O54990 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
Prom1O54990 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC30.16■■■□□ 2.42
Prom1O54990 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Prom1O54990 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC30.06■■■□□ 2.4
Prom1O54990 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Prom1O54990 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
Prom1O54990 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC30.04■■■□□ 2.4
Prom1O54990 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC30■■■□□ 2.39
Prom1O54990 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC30■■■□□ 2.39
Prom1O54990 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC29.99■■■□□ 2.39
Prom1O54990 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC29.99■■■□□ 2.39
Prom1O54990 Gm16148-201ENSMUST00000119653 893 ntBASIC29.99■■■□□ 2.39
Prom1O54990 Peli2-204ENSMUST00000226513 1320 ntBASIC29.98■■■□□ 2.39
Prom1O54990 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
Prom1O54990 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Prom1O54990 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC29.95■■■□□ 2.39
Prom1O54990 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
Prom1O54990 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC29.94■■■□□ 2.38
Prom1O54990 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Prom1O54990 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Prom1O54990 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC29.91■■■□□ 2.38
Prom1O54990 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Prom1O54990 Mipep-204ENSMUST00000225043 1548 ntBASIC29.91■■■□□ 2.38
Prom1O54990 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
Prom1O54990 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
Prom1O54990 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
Prom1O54990 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC29.85■■■□□ 2.37
Retrieved 100 of 76,532 protein–RNA pairs in 8.6 ms