Protein–RNA interactions for Protein: B1AVM1

Gm12887, Predicted gene 12887, mousemouse

Predictions only

Length 119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gm12887B1AVM1 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
Gm12887B1AVM1 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Gm12887B1AVM1 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC22.16■■□□□ 1.14
Gm12887B1AVM1 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Gm12887B1AVM1 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
Gm12887B1AVM1 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Gm12887B1AVM1 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
Gm12887B1AVM1 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC22.05■■□□□ 1.12
Gm12887B1AVM1 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Gm12887B1AVM1 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Gm12887B1AVM1 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Gm12887B1AVM1 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Gm12887B1AVM1 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Gm12887B1AVM1 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Gm12887B1AVM1 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC21.83■■□□□ 1.09
Gm12887B1AVM1 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC21.83■■□□□ 1.09
Gm12887B1AVM1 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Gm12887B1AVM1 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Gm12887B1AVM1 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Gm12887B1AVM1 AC153504.1-201ENSMUST00000218379 2290 ntBASIC21.75■■□□□ 1.07
Gm12887B1AVM1 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Gm12887B1AVM1 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Gm12887B1AVM1 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC21.7■■□□□ 1.06
Gm12887B1AVM1 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Gm12887B1AVM1 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Gm12887B1AVM1 Gm2415-204ENSMUST00000190235 2004 ntBASIC21.67■■□□□ 1.06
Gm12887B1AVM1 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Gm12887B1AVM1 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Gm12887B1AVM1 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.04
Gm12887B1AVM1 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Gm12887B1AVM1 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
Gm12887B1AVM1 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Gm12887B1AVM1 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Gm12887B1AVM1 Gm27325-201ENSMUST00000175467 74 ntBASIC21.49■■□□□ 1.03
Gm12887B1AVM1 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Gm12887B1AVM1 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Gm12887B1AVM1 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Gm12887B1AVM1 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Gm12887B1AVM1 Gm6658-202ENSMUST00000209493 1885 ntBASIC21.46■■□□□ 1.03
Gm12887B1AVM1 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Gm12887B1AVM1 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Gm12887B1AVM1 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Gm12887B1AVM1 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Gm12887B1AVM1 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Gm12887B1AVM1 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Gm12887B1AVM1 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Gm12887B1AVM1 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Gm12887B1AVM1 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Gm12887B1AVM1 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Gm12887B1AVM1 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Gm12887B1AVM1 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Gm12887B1AVM1 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Gm12887B1AVM1 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Gm12887B1AVM1 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Gm12887B1AVM1 Zfp131-207ENSMUST00000224946 1783 ntBASIC21.33■■□□□ 1
Gm12887B1AVM1 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Gm12887B1AVM1 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Gm12887B1AVM1 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC21.28■■□□□ 1
Gm12887B1AVM1 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Gm12887B1AVM1 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Gm12887B1AVM1 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Gm12887B1AVM1 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Gm12887B1AVM1 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Gm12887B1AVM1 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC21.23■□□□□ 0.99
Gm12887B1AVM1 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Gm12887B1AVM1 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC21.2■□□□□ 0.98
Gm12887B1AVM1 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Gm12887B1AVM1 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Gm12887B1AVM1 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Gm12887B1AVM1 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Gm12887B1AVM1 Zxda-201ENSMUST00000117281 2621 ntBASIC21.17■□□□□ 0.98
Gm12887B1AVM1 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Gm12887B1AVM1 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Gm12887B1AVM1 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Gm12887B1AVM1 Gm9905-201ENSMUST00000065740 1845 ntBASIC21.15■□□□□ 0.98
Gm12887B1AVM1 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Gm12887B1AVM1 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Gm12887B1AVM1 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC21.13■□□□□ 0.97
Gm12887B1AVM1 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Gm12887B1AVM1 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Gm12887B1AVM1 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Gm12887B1AVM1 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Gm12887B1AVM1 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Gm12887B1AVM1 Gm6206-201ENSMUST00000133472 2199 ntBASIC21.1■□□□□ 0.97
Gm12887B1AVM1 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Gm12887B1AVM1 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Gm12887B1AVM1 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
Gm12887B1AVM1 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC21.06■□□□□ 0.96
Gm12887B1AVM1 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC21.05■□□□□ 0.96
Gm12887B1AVM1 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Gm12887B1AVM1 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Gm12887B1AVM1 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Gm12887B1AVM1 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Gm12887B1AVM1 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC21■□□□□ 0.95
Gm12887B1AVM1 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Gm12887B1AVM1 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC20.97■□□□□ 0.95
Gm12887B1AVM1 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Gm12887B1AVM1 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Gm12887B1AVM1 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Gm12887B1AVM1 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms