Protein–RNA interactions for Protein: A6H584

Col6a5, Collagen alpha-5(VI) chain, mousemouse

Predictions only

Length 2,640 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a5A6H584 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC22,37■■□□□ 1,17
Col6a5A6H584 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC22,3■■□□□ 1,16
Col6a5A6H584 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC22,27■■□□□ 1,16
Col6a5A6H584 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC22,27■■□□□ 1,16
Col6a5A6H584 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC22,26■■□□□ 1,15
Col6a5A6H584 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC22,26■■□□□ 1,15
Col6a5A6H584 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC22,26■■□□□ 1,15
Col6a5A6H584 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC22,25■■□□□ 1,15
Col6a5A6H584 Gm5987-201ENSMUST00000196433 1151 ntBASIC22,17■■□□□ 1,14
Col6a5A6H584 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC22,17■■□□□ 1,14
Col6a5A6H584 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22,17■■□□□ 1,14
Col6a5A6H584 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC22,14■■□□□ 1,14
Col6a5A6H584 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC22,12■■□□□ 1,13
Col6a5A6H584 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC22,11■■□□□ 1,13
Col6a5A6H584 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC22,1■■□□□ 1,13
Col6a5A6H584 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC22,09■■□□□ 1,13
Col6a5A6H584 Tdp2-203ENSMUST00000223804 1136 ntBASIC22,08■■□□□ 1,13
Col6a5A6H584 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC22,07■■□□□ 1,12
Col6a5A6H584 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC22,06■■□□□ 1,12
Col6a5A6H584 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC22,03■■□□□ 1,12
Col6a5A6H584 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC22,03■■□□□ 1,12
Col6a5A6H584 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC22,02■■□□□ 1,12
Col6a5A6H584 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1,11
Col6a5A6H584 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1,11
Col6a5A6H584 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21,99■■□□□ 1,11
Col6a5A6H584 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC21,99■■□□□ 1,11
Col6a5A6H584 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC21,98■■□□□ 1,11
Col6a5A6H584 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC21,96■■□□□ 1,11
Col6a5A6H584 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC21,94■■□□□ 1,1
Col6a5A6H584 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC21,89■■□□□ 1,1
Col6a5A6H584 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC21,89■■□□□ 1,09
Col6a5A6H584 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC21,88■■□□□ 1,09
Col6a5A6H584 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC21,87■■□□□ 1,09
Col6a5A6H584 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC21,86■■□□□ 1,09
Col6a5A6H584 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21,85■■□□□ 1,09
Col6a5A6H584 AC166822.3-201ENSMUST00000227394 661 ntBASIC21,84■■□□□ 1,09
Col6a5A6H584 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC21,8■■□□□ 1,08
Col6a5A6H584 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC21,8■■□□□ 1,08
Col6a5A6H584 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC21,78■■□□□ 1,08
Col6a5A6H584 Gm16148-201ENSMUST00000119653 893 ntBASIC21,78■■□□□ 1,08
Col6a5A6H584 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC21,75■■□□□ 1,07
Col6a5A6H584 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC21,75■■□□□ 1,07
Col6a5A6H584 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC21,75■■□□□ 1,07
Col6a5A6H584 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC21,74■■□□□ 1,07
Col6a5A6H584 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21,71■■□□□ 1,07
Col6a5A6H584 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC21,69■■□□□ 1,06
Col6a5A6H584 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC21,68■■□□□ 1,06
Col6a5A6H584 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC21,67■■□□□ 1,06
Col6a5A6H584 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC21,66■■□□□ 1,06
Col6a5A6H584 Gm45855-201ENSMUST00000212546 880 ntBASIC21,66■■□□□ 1,06
Col6a5A6H584 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC21,66■■□□□ 1,06
Col6a5A6H584 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC21,65■■□□□ 1,06
Col6a5A6H584 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21,65■■□□□ 1,06
Col6a5A6H584 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC21,65■■□□□ 1,06
Col6a5A6H584 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC21,64■■□□□ 1,05
Col6a5A6H584 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC21,63■■□□□ 1,05
Col6a5A6H584 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21,59■■□□□ 1,05
Col6a5A6H584 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC21,57■■□□□ 1,04
Col6a5A6H584 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC21,57■■□□□ 1,04
Col6a5A6H584 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC21,56■■□□□ 1,04
Col6a5A6H584 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC21,56■■□□□ 1,04
Col6a5A6H584 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC21,54■■□□□ 1,04
Col6a5A6H584 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC21,54■■□□□ 1,04
Col6a5A6H584 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC21,54■■□□□ 1,04
Col6a5A6H584 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC21,52■■□□□ 1,04
Col6a5A6H584 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC21,52■■□□□ 1,04
Col6a5A6H584 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC21,5■■□□□ 1,03
Col6a5A6H584 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC21,49■■□□□ 1,03
Col6a5A6H584 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC21,49■■□□□ 1,03
Col6a5A6H584 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC21,49■■□□□ 1,03
Col6a5A6H584 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC21,48■■□□□ 1,03
Col6a5A6H584 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC21,44■■□□□ 1,02
Col6a5A6H584 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC21,43■■□□□ 1,02
Col6a5A6H584 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC21,43■■□□□ 1,02
Col6a5A6H584 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC21,43■■□□□ 1,02
Col6a5A6H584 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC21,41■■□□□ 1,02
Col6a5A6H584 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC21,4■■□□□ 1,02
Col6a5A6H584 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC21,4■■□□□ 1,02
Col6a5A6H584 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC21,38■■□□□ 1,01
Col6a5A6H584 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC21,38■■□□□ 1,01
Col6a5A6H584 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC21,37■■□□□ 1,01
Col6a5A6H584 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC21,37■■□□□ 1,01
Col6a5A6H584 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC21,36■■□□□ 1,01
Col6a5A6H584 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC21,36■■□□□ 1,01
Col6a5A6H584 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21,36■■□□□ 1,01
Col6a5A6H584 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC21,31■■□□□ 1
Col6a5A6H584 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC21,31■■□□□ 1
Col6a5A6H584 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC21,29■■□□□ 1
Col6a5A6H584 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC21,29■■□□□ 1
Col6a5A6H584 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC21,27■■□□□ 1
Col6a5A6H584 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC21,26■□□□□ 0,99
Col6a5A6H584 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC21,26■□□□□ 0,99
Col6a5A6H584 Gm9397-201ENSMUST00000200125 605 ntBASIC21,25■□□□□ 0,99
Col6a5A6H584 Psd-208ENSMUST00000224556 2034 ntBASIC21,25■□□□□ 0,99
Col6a5A6H584 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC21,25■□□□□ 0,99
Col6a5A6H584 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21,23■□□□□ 0,99
Col6a5A6H584 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC21,23■□□□□ 0,99
Col6a5A6H584 Peli2-204ENSMUST00000226513 1320 ntBASIC21,18■□□□□ 0,98
Col6a5A6H584 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC21,17■□□□□ 0,98
Col6a5A6H584 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC21,17■□□□□ 0,98
Retrieved 100 of 76,532 protein–RNA pairs in 11,8 ms