Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav11A0A0B4J1J9 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav11A0A0B4J1J9 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trav11A0A0B4J1J9 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trav11A0A0B4J1J9 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav11A0A0B4J1J9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav11A0A0B4J1J9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav11A0A0B4J1J9 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav11A0A0B4J1J9 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Trav11A0A0B4J1J9 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav11A0A0B4J1J9 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC18.46■□□□□ 0.55
Trav11A0A0B4J1J9 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
Trav11A0A0B4J1J9 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav11A0A0B4J1J9 Gm27325-201ENSMUST00000175467 74 ntBASIC18.41■□□□□ 0.54
Trav11A0A0B4J1J9 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav11A0A0B4J1J9 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav11A0A0B4J1J9 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav11A0A0B4J1J9 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav11A0A0B4J1J9 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Trav11A0A0B4J1J9 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trav11A0A0B4J1J9 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC18.33■□□□□ 0.52
Trav11A0A0B4J1J9 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav11A0A0B4J1J9 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav11A0A0B4J1J9 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC18.29■□□□□ 0.52
Trav11A0A0B4J1J9 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC18.29■□□□□ 0.52
Trav11A0A0B4J1J9 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trav11A0A0B4J1J9 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC18.25■□□□□ 0.51
Trav11A0A0B4J1J9 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Trav11A0A0B4J1J9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav11A0A0B4J1J9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav11A0A0B4J1J9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC18.22■□□□□ 0.51
Trav11A0A0B4J1J9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav11A0A0B4J1J9 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav11A0A0B4J1J9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC18.15■□□□□ 0.5
Trav11A0A0B4J1J9 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav11A0A0B4J1J9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav11A0A0B4J1J9 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav11A0A0B4J1J9 Gm2415-204ENSMUST00000190235 2004 ntBASIC18.09■□□□□ 0.49
Trav11A0A0B4J1J9 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav11A0A0B4J1J9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC18.08■□□□□ 0.48
Trav11A0A0B4J1J9 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav11A0A0B4J1J9 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav11A0A0B4J1J9 Gm25238-201ENSMUST00000174914 89 ntBASIC18.07■□□□□ 0.48
Trav11A0A0B4J1J9 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav11A0A0B4J1J9 AC153504.1-201ENSMUST00000218379 2290 ntBASIC18.04■□□□□ 0.48
Trav11A0A0B4J1J9 Zfp131-207ENSMUST00000224946 1783 ntBASIC18.04■□□□□ 0.48
Trav11A0A0B4J1J9 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trav11A0A0B4J1J9 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav11A0A0B4J1J9 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav11A0A0B4J1J9 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trav11A0A0B4J1J9 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trav11A0A0B4J1J9 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav11A0A0B4J1J9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC17.98■□□□□ 0.47
Trav11A0A0B4J1J9 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trav11A0A0B4J1J9 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trav11A0A0B4J1J9 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav11A0A0B4J1J9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC17.96■□□□□ 0.47
Trav11A0A0B4J1J9 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav11A0A0B4J1J9 Gm6658-202ENSMUST00000209493 1885 ntBASIC17.94■□□□□ 0.46
Trav11A0A0B4J1J9 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav11A0A0B4J1J9 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Trav11A0A0B4J1J9 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav11A0A0B4J1J9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
Trav11A0A0B4J1J9 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trav11A0A0B4J1J9 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav11A0A0B4J1J9 Zxda-201ENSMUST00000117281 2621 ntBASIC17.88■□□□□ 0.45
Trav11A0A0B4J1J9 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav11A0A0B4J1J9 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trav11A0A0B4J1J9 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav11A0A0B4J1J9 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav11A0A0B4J1J9 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav11A0A0B4J1J9 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav11A0A0B4J1J9 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
Trav11A0A0B4J1J9 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trav11A0A0B4J1J9 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trav11A0A0B4J1J9 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav11A0A0B4J1J9 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC17.82■□□□□ 0.44
Trav11A0A0B4J1J9 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav11A0A0B4J1J9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC17.8■□□□□ 0.44
Trav11A0A0B4J1J9 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Trav11A0A0B4J1J9 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav11A0A0B4J1J9 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav11A0A0B4J1J9 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav11A0A0B4J1J9 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trav11A0A0B4J1J9 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC17.77■□□□□ 0.43
Trav11A0A0B4J1J9 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trav11A0A0B4J1J9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
Trav11A0A0B4J1J9 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav11A0A0B4J1J9 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav11A0A0B4J1J9 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC17.72■□□□□ 0.43
Trav11A0A0B4J1J9 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav11A0A0B4J1J9 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav11A0A0B4J1J9 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav11A0A0B4J1J9 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Trav11A0A0B4J1J9 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav11A0A0B4J1J9 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav11A0A0B4J1J9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav11A0A0B4J1J9 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav11A0A0B4J1J9 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trav11A0A0B4J1J9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 8.5 ms