Protein–RNA interactions for Protein: A0A075B6B3

Trav6d-3, T cell receptor alpha variable 6D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-3A0A075B6B3 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC22,2■■□□□ 1,14
Trav6d-3A0A075B6B3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC22,19■■□□□ 1,14
Trav6d-3A0A075B6B3 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC22,15■■□□□ 1,14
Trav6d-3A0A075B6B3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC22,14■■□□□ 1,13
Trav6d-3A0A075B6B3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC22,12■■□□□ 1,13
Trav6d-3A0A075B6B3 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC22,1■■□□□ 1,13
Trav6d-3A0A075B6B3 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22,07■■□□□ 1,12
Trav6d-3A0A075B6B3 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC22,04■■□□□ 1,12
Trav6d-3A0A075B6B3 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC22,01■■□□□ 1,11
Trav6d-3A0A075B6B3 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1,11
Trav6d-3A0A075B6B3 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC21,99■■□□□ 1,11
Trav6d-3A0A075B6B3 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC21,96■■□□□ 1,11
Trav6d-3A0A075B6B3 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC21,94■■□□□ 1,1
Trav6d-3A0A075B6B3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC21,93■■□□□ 1,1
Trav6d-3A0A075B6B3 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC21,92■■□□□ 1,1
Trav6d-3A0A075B6B3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC21,92■■□□□ 1,1
Trav6d-3A0A075B6B3 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC21,91■■□□□ 1,1
Trav6d-3A0A075B6B3 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21,91■■□□□ 1,1
Trav6d-3A0A075B6B3 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC21,88■■□□□ 1,09
Trav6d-3A0A075B6B3 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC21,88■■□□□ 1,09
Trav6d-3A0A075B6B3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC21,85■■□□□ 1,09
Trav6d-3A0A075B6B3 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC21,84■■□□□ 1,09
Trav6d-3A0A075B6B3 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC21,81■■□□□ 1,08
Trav6d-3A0A075B6B3 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC21,81■■□□□ 1,08
Trav6d-3A0A075B6B3 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC21,81■■□□□ 1,08
Trav6d-3A0A075B6B3 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC21,8■■□□□ 1,08
Trav6d-3A0A075B6B3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC21,76■■□□□ 1,07
Trav6d-3A0A075B6B3 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC21,73■■□□□ 1,07
Trav6d-3A0A075B6B3 Zfp131-207ENSMUST00000224946 1783 ntBASIC21,72■■□□□ 1,07
Trav6d-3A0A075B6B3 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC21,68■■□□□ 1,06
Trav6d-3A0A075B6B3 Rab21-202ENSMUST00000218831 843 ntBASIC21,68■■□□□ 1,06
Trav6d-3A0A075B6B3 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC21,68■■□□□ 1,06
Trav6d-3A0A075B6B3 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC21,64■■□□□ 1,06
Trav6d-3A0A075B6B3 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21,63■■□□□ 1,05
Trav6d-3A0A075B6B3 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC21,61■■□□□ 1,05
Trav6d-3A0A075B6B3 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21,61■■□□□ 1,05
Trav6d-3A0A075B6B3 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21,61■■□□□ 1,05
Trav6d-3A0A075B6B3 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC21,59■■□□□ 1,05
Trav6d-3A0A075B6B3 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC21,56■■□□□ 1,04
Trav6d-3A0A075B6B3 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC21,55■■□□□ 1,04
Trav6d-3A0A075B6B3 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21,54■■□□□ 1,04
Trav6d-3A0A075B6B3 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC21,54■■□□□ 1,04
Trav6d-3A0A075B6B3 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC21,53■■□□□ 1,04
Trav6d-3A0A075B6B3 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC21,52■■□□□ 1,04
Trav6d-3A0A075B6B3 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC21,52■■□□□ 1,04
Trav6d-3A0A075B6B3 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC21,52■■□□□ 1,04
Trav6d-3A0A075B6B3 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC21,52■■□□□ 1,03
Trav6d-3A0A075B6B3 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC21,52■■□□□ 1,03
Trav6d-3A0A075B6B3 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC21,51■■□□□ 1,03
Trav6d-3A0A075B6B3 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21,5■■□□□ 1,03
Trav6d-3A0A075B6B3 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC21,49■■□□□ 1,03
Trav6d-3A0A075B6B3 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC21,48■■□□□ 1,03
Trav6d-3A0A075B6B3 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC21,46■■□□□ 1,03
Trav6d-3A0A075B6B3 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC21,46■■□□□ 1,03
Trav6d-3A0A075B6B3 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC21,45■■□□□ 1,02
Trav6d-3A0A075B6B3 Gm2415-204ENSMUST00000190235 2004 ntBASIC21,45■■□□□ 1,02
Trav6d-3A0A075B6B3 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC21,43■■□□□ 1,02
Trav6d-3A0A075B6B3 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC21,43■■□□□ 1,02
Trav6d-3A0A075B6B3 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC21,42■■□□□ 1,02
Trav6d-3A0A075B6B3 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC21,41■■□□□ 1,02
Trav6d-3A0A075B6B3 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC21,4■■□□□ 1,02
Trav6d-3A0A075B6B3 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC21,38■■□□□ 1,01
Trav6d-3A0A075B6B3 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC21,38■■□□□ 1,01
Trav6d-3A0A075B6B3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC21,38■■□□□ 1,01
Trav6d-3A0A075B6B3 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21,37■■□□□ 1,01
Trav6d-3A0A075B6B3 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC21,37■■□□□ 1,01
Trav6d-3A0A075B6B3 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC21,34■■□□□ 1,01
Trav6d-3A0A075B6B3 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC21,33■■□□□ 1
Trav6d-3A0A075B6B3 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC21,32■■□□□ 1
Trav6d-3A0A075B6B3 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC21,32■■□□□ 1
Trav6d-3A0A075B6B3 Gm6658-202ENSMUST00000209493 1885 ntBASIC21,31■■□□□ 1
Trav6d-3A0A075B6B3 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21,29■■□□□ 1
Trav6d-3A0A075B6B3 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21,27■□□□□ 0,99
Trav6d-3A0A075B6B3 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC21,25■□□□□ 0,99
Trav6d-3A0A075B6B3 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC21,23■□□□□ 0,99
Trav6d-3A0A075B6B3 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21,23■□□□□ 0,99
Trav6d-3A0A075B6B3 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC21,23■□□□□ 0,99
Trav6d-3A0A075B6B3 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC21,21■□□□□ 0,99
Trav6d-3A0A075B6B3 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC21,2■□□□□ 0,98
Trav6d-3A0A075B6B3 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC21,19■□□□□ 0,98
Trav6d-3A0A075B6B3 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC21,19■□□□□ 0,98
Trav6d-3A0A075B6B3 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC21,19■□□□□ 0,98
Trav6d-3A0A075B6B3 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC21,18■□□□□ 0,98
Trav6d-3A0A075B6B3 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC21,18■□□□□ 0,98
Trav6d-3A0A075B6B3 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC21,17■□□□□ 0,98
Trav6d-3A0A075B6B3 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC21,17■□□□□ 0,98
Trav6d-3A0A075B6B3 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC21,17■□□□□ 0,98
Trav6d-3A0A075B6B3 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21,16■□□□□ 0,98
Trav6d-3A0A075B6B3 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC21,14■□□□□ 0,97
Trav6d-3A0A075B6B3 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21,12■□□□□ 0,97
Trav6d-3A0A075B6B3 AL845457.1-201ENSMUST00000197244 68 ntBASIC21,12■□□□□ 0,97
Trav6d-3A0A075B6B3 AC153504.1-201ENSMUST00000218379 2290 ntBASIC21,11■□□□□ 0,97
Trav6d-3A0A075B6B3 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21,08■□□□□ 0,97
Trav6d-3A0A075B6B3 Mipep-204ENSMUST00000225043 1548 ntBASIC21,07■□□□□ 0,96
Trav6d-3A0A075B6B3 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21,06■□□□□ 0,96
Trav6d-3A0A075B6B3 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC21,05■□□□□ 0,96
Trav6d-3A0A075B6B3 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC21,03■□□□□ 0,96
Trav6d-3A0A075B6B3 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC21,01■□□□□ 0,95
Trav6d-3A0A075B6B3 Gm25262-201ENSMUST00000174934 133 ntBASIC21,01■□□□□ 0,95
Trav6d-3A0A075B6B3 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0,95
Retrieved 100 of 76,532 protein–RNA pairs in 10,5 ms