Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Trav6-1A0A075B5Z8 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Trav6-1A0A075B5Z8 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trav6-1A0A075B5Z8 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC22.09■■□□□ 1.13
Trav6-1A0A075B5Z8 Gm27325-201ENSMUST00000175467 74 ntBASIC22.09■■□□□ 1.13
Trav6-1A0A075B5Z8 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Trav6-1A0A075B5Z8 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Trav6-1A0A075B5Z8 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
Trav6-1A0A075B5Z8 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trav6-1A0A075B5Z8 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Trav6-1A0A075B5Z8 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC21.93■■□□□ 1.1
Trav6-1A0A075B5Z8 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav6-1A0A075B5Z8 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trav6-1A0A075B5Z8 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trav6-1A0A075B5Z8 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trav6-1A0A075B5Z8 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trav6-1A0A075B5Z8 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
Trav6-1A0A075B5Z8 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Trav6-1A0A075B5Z8 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trav6-1A0A075B5Z8 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trav6-1A0A075B5Z8 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC21.77■■□□□ 1.08
Trav6-1A0A075B5Z8 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC21.74■■□□□ 1.07
Trav6-1A0A075B5Z8 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.73■■□□□ 1.07
Trav6-1A0A075B5Z8 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trav6-1A0A075B5Z8 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trav6-1A0A075B5Z8 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav6-1A0A075B5Z8 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav6-1A0A075B5Z8 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trav6-1A0A075B5Z8 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC21.65■■□□□ 1.06
Trav6-1A0A075B5Z8 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trav6-1A0A075B5Z8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trav6-1A0A075B5Z8 Gm2415-204ENSMUST00000190235 2004 ntBASIC21.63■■□□□ 1.05
Trav6-1A0A075B5Z8 Zfp131-207ENSMUST00000224946 1783 ntBASIC21.62■■□□□ 1.05
Trav6-1A0A075B5Z8 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trav6-1A0A075B5Z8 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.61■■□□□ 1.05
Trav6-1A0A075B5Z8 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trav6-1A0A075B5Z8 Gm25238-201ENSMUST00000174914 89 ntBASIC21.58■■□□□ 1.05
Trav6-1A0A075B5Z8 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Trav6-1A0A075B5Z8 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trav6-1A0A075B5Z8 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC21.55■■□□□ 1.04
Trav6-1A0A075B5Z8 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trav6-1A0A075B5Z8 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trav6-1A0A075B5Z8 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Trav6-1A0A075B5Z8 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Trav6-1A0A075B5Z8 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC21.52■■□□□ 1.04
Trav6-1A0A075B5Z8 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Trav6-1A0A075B5Z8 Gm6658-202ENSMUST00000209493 1885 ntBASIC21.49■■□□□ 1.03
Trav6-1A0A075B5Z8 AC153504.1-201ENSMUST00000218379 2290 ntBASIC21.48■■□□□ 1.03
Trav6-1A0A075B5Z8 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Trav6-1A0A075B5Z8 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trav6-1A0A075B5Z8 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Trav6-1A0A075B5Z8 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Trav6-1A0A075B5Z8 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Trav6-1A0A075B5Z8 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC21.39■■□□□ 1.01
Trav6-1A0A075B5Z8 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Trav6-1A0A075B5Z8 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC21.36■■□□□ 1.01
Trav6-1A0A075B5Z8 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav6-1A0A075B5Z8 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav6-1A0A075B5Z8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Trav6-1A0A075B5Z8 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trav6-1A0A075B5Z8 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trav6-1A0A075B5Z8 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
Trav6-1A0A075B5Z8 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trav6-1A0A075B5Z8 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC21.29■■□□□ 1
Trav6-1A0A075B5Z8 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
Trav6-1A0A075B5Z8 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Trav6-1A0A075B5Z8 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.28■■□□□ 1
Trav6-1A0A075B5Z8 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Trav6-1A0A075B5Z8 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trav6-1A0A075B5Z8 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC21.27■■□□□ 1
Trav6-1A0A075B5Z8 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Trav6-1A0A075B5Z8 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC21.25■□□□□ 0.99
Trav6-1A0A075B5Z8 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav6-1A0A075B5Z8 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav6-1A0A075B5Z8 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trav6-1A0A075B5Z8 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC21.18■□□□□ 0.98
Trav6-1A0A075B5Z8 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trav6-1A0A075B5Z8 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
Trav6-1A0A075B5Z8 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav6-1A0A075B5Z8 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC21.16■□□□□ 0.98
Trav6-1A0A075B5Z8 Rab21-202ENSMUST00000218831 843 ntBASIC21.16■□□□□ 0.98
Trav6-1A0A075B5Z8 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav6-1A0A075B5Z8 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC21.14■□□□□ 0.97
Trav6-1A0A075B5Z8 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trav6-1A0A075B5Z8 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trav6-1A0A075B5Z8 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trav6-1A0A075B5Z8 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trav6-1A0A075B5Z8 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav6-1A0A075B5Z8 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Trav6-1A0A075B5Z8 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trav6-1A0A075B5Z8 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav6-1A0A075B5Z8 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Trav6-1A0A075B5Z8 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Trav6-1A0A075B5Z8 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trav6-1A0A075B5Z8 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trav6-1A0A075B5Z8 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trav6-1A0A075B5Z8 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trav6-1A0A075B5Z8 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trav6-1A0A075B5Z8 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trav6-1A0A075B5Z8 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms