Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL18A1P39060 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL18A1P39060 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
COL18A1P39060 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
COL18A1P39060 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL18A1P39060 AC124067.4-201ENST00000519691 2379 ntBASIC20.59■□□□□ 0.89
COL18A1P39060 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL18A1P39060 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
COL18A1P39060 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
COL18A1P39060 CYP46A4P-201ENST00000414953 267 ntBASIC20.59■□□□□ 0.89
COL18A1P39060 PTPA-218ENST00000435132 618 ntTSL 2 BASIC20.59■□□□□ 0.89
COL18A1P39060 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC20.59■□□□□ 0.89
COL18A1P39060 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
COL18A1P39060 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC20.59■□□□□ 0.89
COL18A1P39060 MIR4706-201ENST00000582134 82 ntBASIC20.59■□□□□ 0.89
COL18A1P39060 AL645939.5-201ENST00000606834 243 ntBASIC20.59■□□□□ 0.89
COL18A1P39060 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC20.59■□□□□ 0.89
COL18A1P39060 AL645728.2-202ENST00000641679 227 ntBASIC20.59■□□□□ 0.89
COL18A1P39060 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL18A1P39060 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL18A1P39060 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
COL18A1P39060 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
COL18A1P39060 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.58■□□□□ 0.89
COL18A1P39060 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL18A1P39060 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL18A1P39060 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL18A1P39060 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL18A1P39060 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
COL18A1P39060 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
COL18A1P39060 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC20.58■□□□□ 0.89
COL18A1P39060 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC20.58■□□□□ 0.89
COL18A1P39060 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC20.58■□□□□ 0.89
COL18A1P39060 HIST2H2BB-201ENST00000449108 381 ntBASIC20.58■□□□□ 0.89
COL18A1P39060 AC114812.1-204ENST00000449669 728 ntBASIC20.58■□□□□ 0.89
COL18A1P39060 RPS2P36-201ENST00000456516 831 ntBASIC20.58■□□□□ 0.89
COL18A1P39060 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC20.58■□□□□ 0.89
COL18A1P39060 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL18A1P39060 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC20.58■□□□□ 0.89
COL18A1P39060 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC20.58■□□□□ 0.89
COL18A1P39060 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC20.58■□□□□ 0.89
COL18A1P39060 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC20.58■□□□□ 0.89
COL18A1P39060 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL18A1P39060 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL18A1P39060 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.58■□□□□ 0.88
COL18A1P39060 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL18A1P39060 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL18A1P39060 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL18A1P39060 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL18A1P39060 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
COL18A1P39060 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL18A1P39060 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL18A1P39060 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL18A1P39060 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL18A1P39060 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL18A1P39060 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COL18A1P39060 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC20.57■□□□□ 0.88
COL18A1P39060 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC20.57■□□□□ 0.88
COL18A1P39060 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC20.57■□□□□ 0.88
COL18A1P39060 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC20.57■□□□□ 0.88
COL18A1P39060 MIR4722-201ENST00000578292 60 ntBASIC20.57■□□□□ 0.88
COL18A1P39060 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COL18A1P39060 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COL18A1P39060 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL18A1P39060 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
COL18A1P39060 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL18A1P39060 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL18A1P39060 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.57■□□□□ 0.88
COL18A1P39060 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL18A1P39060 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
COL18A1P39060 AL158070.2-201ENST00000623713 1621 ntBASIC20.57■□□□□ 0.88
COL18A1P39060 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC20.57■□□□□ 0.88
COL18A1P39060 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
COL18A1P39060 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC20.57■□□□□ 0.88
COL18A1P39060 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC20.57■□□□□ 0.88
COL18A1P39060 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC20.57■□□□□ 0.88
COL18A1P39060 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC20.57■□□□□ 0.88
COL18A1P39060 ZACNP1-201ENST00000612259 710 ntBASIC20.57■□□□□ 0.88
COL18A1P39060 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL18A1P39060 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL18A1P39060 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL18A1P39060 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC20.56■□□□□ 0.88
COL18A1P39060 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
COL18A1P39060 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC20.56■□□□□ 0.88
COL18A1P39060 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL18A1P39060 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC20.56■□□□□ 0.88
COL18A1P39060 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC20.56■□□□□ 0.88
COL18A1P39060 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
COL18A1P39060 MIR33B-201ENST00000385104 96 ntBASIC20.56■□□□□ 0.88
COL18A1P39060 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
COL18A1P39060 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
COL18A1P39060 PTPA-217ENST00000434095 870 ntTSL 2 BASIC20.56■□□□□ 0.88
COL18A1P39060 TMEM198B-204ENST00000484016 896 ntBASIC20.56■□□□□ 0.88
COL18A1P39060 AC013355.1-201ENST00000562625 723 ntBASIC20.56■□□□□ 0.88
COL18A1P39060 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC20.56■□□□□ 0.88
COL18A1P39060 KLK3-207ENST00000595952 969 ntTSL 3 BASIC20.56■□□□□ 0.88
COL18A1P39060 AF254983.2-201ENST00000612331 135 ntBASIC20.56■□□□□ 0.88
COL18A1P39060 AC022748.3-201ENST00000621828 275 ntBASIC20.56■□□□□ 0.88
COL18A1P39060 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC20.56■□□□□ 0.88
COL18A1P39060 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL18A1P39060 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms