Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.52■□□□□ 0.07
FOXA1P55317 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
FOXA1P55317 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
FOXA1P55317 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
FOXA1P55317 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
FOXA1P55317 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
FOXA1P55317 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
FOXA1P55317 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
FOXA1P55317 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.52■□□□□ 0.07
FOXA1P55317 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
FOXA1P55317 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.51■□□□□ 0.07
FOXA1P55317 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
FOXA1P55317 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.51■□□□□ 0.07
FOXA1P55317 C18orf15-201ENST00000623680 2534 ntBASIC15.51■□□□□ 0.07
FOXA1P55317 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.51■□□□□ 0.07
FOXA1P55317 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
FOXA1P55317 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
FOXA1P55317 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.51■□□□□ 0.07
FOXA1P55317 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.51■□□□□ 0.07
FOXA1P55317 AL355306.1-201ENST00000415580 579 ntBASIC15.51■□□□□ 0.07
FOXA1P55317 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.51■□□□□ 0.07
FOXA1P55317 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.51■□□□□ 0.07
FOXA1P55317 AC142381.1-201ENST00000426099 345 ntBASIC15.51■□□□□ 0.07
FOXA1P55317 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.51■□□□□ 0.07
FOXA1P55317 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 AL135744.1-201ENST00000565098 629 ntBASIC15.51■□□□□ 0.07
FOXA1P55317 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.51■□□□□ 0.07
FOXA1P55317 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.51■□□□□ 0.07
FOXA1P55317 MIR4313-201ENST00000580760 101 ntBASIC15.51■□□□□ 0.07
FOXA1P55317 KLK8-205ENST00000593490 267 ntTSL 3 BASIC15.51■□□□□ 0.07
FOXA1P55317 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.51■□□□□ 0.07
FOXA1P55317 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.51■□□□□ 0.07
FOXA1P55317 AL121894.2-201ENST00000602977 491 ntBASIC15.51■□□□□ 0.07
FOXA1P55317 AC091812.2-201ENST00000619081 385 ntBASIC15.51■□□□□ 0.07
FOXA1P55317 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.51■□□□□ 0.07
FOXA1P55317 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.51■□□□□ 0.07
FOXA1P55317 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.51■□□□□ 0.07
FOXA1P55317 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
FOXA1P55317 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.51■□□□□ 0.07
FOXA1P55317 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.51■□□□□ 0.07
FOXA1P55317 AL136982.4-201ENST00000437689 1740 ntBASIC15.51■□□□□ 0.07
FOXA1P55317 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 REXO1L1P-202ENST00000608646 1974 ntBASIC15.51■□□□□ 0.07
FOXA1P55317 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.51■□□□□ 0.07
FOXA1P55317 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.51■□□□□ 0.07
FOXA1P55317 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA1P55317 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
FOXA1P55317 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
FOXA1P55317 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 ZNF259P1-201ENST00000407656 1365 ntBASIC15.5■□□□□ 0.07
FOXA1P55317 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.5■□□□□ 0.07
FOXA1P55317 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
FOXA1P55317 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.5■□□□□ 0.07
FOXA1P55317 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
FOXA1P55317 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
FOXA1P55317 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC15.5■□□□□ 0.07
FOXA1P55317 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
FOXA1P55317 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.5■□□□□ 0.07
FOXA1P55317 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.5■□□□□ 0.07
FOXA1P55317 KRT18P3-201ENST00000451602 1288 ntBASIC15.5■□□□□ 0.07
FOXA1P55317 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.5■□□□□ 0.07
FOXA1P55317 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.5■□□□□ 0.07
FOXA1P55317 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.5■□□□□ 0.07
FOXA1P55317 RNA5SP416-201ENST00000516838 111 ntBASIC15.5■□□□□ 0.07
FOXA1P55317 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.5■□□□□ 0.07
FOXA1P55317 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
FOXA1P55317 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.5■□□□□ 0.07
FOXA1P55317 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.5■□□□□ 0.07
FOXA1P55317 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms