Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 HNRNPA1P48-202ENST00000565308 961 ntBASIC20.18■□□□□ 0.82
SCN11AQ9UI33 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 C2orf27AP3-201ENST00000434123 579 ntBASIC20.18■□□□□ 0.82
SCN11AQ9UI33 AC006033.1-201ENST00000440505 426 ntBASIC20.18■□□□□ 0.82
SCN11AQ9UI33 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 AC244093.1-201ENST00000610837 814 ntBASIC20.18■□□□□ 0.82
SCN11AQ9UI33 AL354718.3-201ENST00000616414 581 ntBASIC20.18■□□□□ 0.82
SCN11AQ9UI33 CR382287.1-201ENST00000623954 586 ntBASIC20.18■□□□□ 0.82
SCN11AQ9UI33 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 AC008687.7-202ENST00000637404 953 ntBASIC20.17■□□□□ 0.82
SCN11AQ9UI33 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SCN11AQ9UI33 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 ACKR1-201ENST00000368121 1240 ntBASIC20.16■□□□□ 0.82
SCN11AQ9UI33 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 PRKN-211ENST00000615065 261 ntTSL 5 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 TKT-202ENST00000423516 2075 ntTSL 2 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 AC148477.4-201ENST00000613430 1793 ntBASIC20.16■□□□□ 0.82
SCN11AQ9UI33 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 AL596087.1-201ENST00000400979 1969 ntBASIC20.16■□□□□ 0.82
SCN11AQ9UI33 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC20.16■□□□□ 0.82
SCN11AQ9UI33 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms