Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 OLR1-203ENST00000432556 950 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 C2orf27AP3-201ENST00000434123 579 ntBASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 AC093813.1-201ENST00000605066 256 ntBASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 AL118558.3-201ENST00000607414 1079 ntBASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 LARP4-220ENST00000615080 856 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 AL354718.3-201ENST00000616414 581 ntBASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 CR382287.1-201ENST00000623954 586 ntBASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC87Q9NVE4 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 SLC25A24P2-201ENST00000415059 510 ntBASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 COG4-212ENST00000564653 590 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC87Q9NVE4 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 AC025279.2-201ENST00000569730 653 ntBASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 AC015910.1-201ENST00000579400 975 ntBASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 AC106872.11-201ENST00000605838 421 ntBASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC87Q9NVE4 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms